Gene detail

Detail information of GWHGAAEX002540/evm.TU.scaffold_121.1

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	4.00E-132	FOG: PPR repeat
nr	gi\|743871702\|ref\|XP_010906368.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At4g04790, mitochondrial-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q6NQ81\|PP304_ARATH	1.00E-180	Pentatricopeptide repeat-containing protein At4g04790, mitochondrial (Precursor)
trEMBL	tr\|K3YPS2\|K3YPS2_SETIT	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si016264m}
TAIR	AT4G04790	4.00E-132	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	4547	91218	-

Transcript Sequence
>GWHTAAEX002540 ATGGCCACGCCCAAGAGCAGCAGCAAGCTCCTGTATTCCGCTTTGCTGAAGAACTTCAAGGCAAACGCCGGCGAAGAGGTTCATGCTACCTCAGAGCTCTCATCTCCGCTGAAGATTCTCAACAAACGGCACGGAAGCACTCCGACTTCTCCCTGCTCTTCTTCCGCTCCAACGGGGAGCCCGCCGAAGCCATTCTCCGGACTAGCCGACAAGTTTGTTTTGCAGCTAAAGAACGCGTCTGCAAAAAAATCGGAGAAGTCCATTGCCATTGATCAGGAATCATGTGCGGAAGTAGCGAGGGCGATCTCTTTGATCATTCCCGGTTCTAATGATCGCGACTCAGCCACACTACAGTTCAGCTTCGCTCAATCTAATCGAAAAGAGTATCAGAATGTGGTAGATCAGAGGAAAAAGGAAACATCTAGATTTAGGAAGCAAAAAGTTGTCCAAAAGAACGTGAAGTCTCGCCATTTTGTAAAACTAATGAATATTTGCGCAGAGAAGCTGGATGTTCAATCTACTCTTGGGGTGCTTAATACGATGGGTAGACAAATAAGTTCGAAGGAATATACGACATTGATTACGTTTTGGATAGAGAAGGCCAGAAAAAACAATGATGAAGATTCTTTATGTTGCATTCAAAAAGTATTTCATCTCTTCGCATGCATGAAAGAAAGAGGTTTTCAGATTTTGGAAGATTGTTATGGCCCTCTGTTTGTGTATATGATTGACATGGGACTGAAGGAAGAATTCCACAATGTCACTAAATTCATTAAAGATTATGATCATAAATCCTACACCAAAATTGGTTACTATGAGATGCTATTCTGCATTAAGACTGGAGATAAATGCAGAATTATGGAGCTATGCAATTCGATTGTAACTGATTGCAGTGACGGTAACAATAAATTAGCAGAAAGCTATTTGTTAGCCTTGTGTGAAAATGACATGGAGGATGAGCTGATCCTATTGCTAGAAGCTTTTGATATGAGCAGCATTTCATCACTGGAACTTGCATCCTGTATTTCTAAATCCACTGGGAGGTTGAAAATTGAGGATTTTATTGAGAAGTTAATTATGACATTCAAGATTAGAGGAACTGATGAAGAGGATATTTCATCCTTAGTTTACGATTATGCTTCCAGCATACCTAATTTATCGGTTGAAGATATTTTATCAAAGTTTGAAAAGTTACATGAAAAAGTTGGAGTCATACCTACAATTGCATCTTGGAACAAGCTTATTAAGCATTCTTGCAATCTGTCTAAGGTACAATCATCTCTTGACATAGCTGACCGTATGTGCCAATCAGATTTGACTGCTTCAGTTGAATCCTTTCATCCAATTTTACATGCGTGTGAGCAAACTTTTGAGTTTGATCTGGTTCATCAAATATATTCTGTGATTTGCCGCTATAACCTGAAGCCCAAAGGAGATACATTCAAAAGCTTGATAACCTTGTTTGTAAAGATGAAAGATTTTGAGGGTGCTCACAACCTTTTGAAAGATGCAAGAGAGATGAATGTGATACCAACATCAGACATGTATAATGCACTCATGGCTGGGTATATTAGAGAGAAAAACAATCTTGGTGCTTCCAAGGTTCTACAACAAATGCAACATTTGGATATTAAACCAGATTCGAAGACTTACAGTTACTTGATATCCAGCTGTGGAAGTGAACGGGATATTACCAAGTATTATGATGAAATGCAACACACTGGAGTTCAAGCAACAAAGTTTGTTTATATGGCGCTTATTAATGCATATGCCAAATTTGGAAATTTTGATAAGGCTGCACAGGTGATTCCAGATGCGGGCATACCAACTAGATGTTTGAATGAATTAAAGAATGTACTTGTATCAGCTCTTTCTTCAAATGGGAAAATGACTGAAGCACTTCACGTGTATGTGCAAATTAATCAAGCTGGTGACAAAATTGAACCTAAGGCGGCCATAACTCTCATTGAACACCTACAAAATGTAGGAAATTTGGATAGGCTGCAGCAGCTTTTGGTTGAGCTGATTGATTCACGCTACTGGTTTGATGGGTGCAGTAGAGTAGTATTGTACTGTGTGCGGCATGACTTAGTTAGACCTGCAGTTGAGATACTTGAGAAGCTCAAGAAGAAAGATGAATCAAGCACATATATTGTTATTGATCAGGTCTTCGGCGAAATATGGTCAATGGAACCAACTAACTTAGAAATCGGCCTGCAATTGCTTCGGGCTATTAAAGAAGAGCTGCATCTCTGTATTAGTCGAATTAGTCTAGATTTTCTTCTCAGCACTTGTGCAAAAGCAAAGGATCCGCTGCATGCTAAAGTTGTTTGGTCTGAATATGAAGATGCCGGACTTCCATACAACATCTTAACTTACTTGAGGATTTATCAAGCTTTGTTAGCTTCAGGCGATGCGAATGCAGCATCAAACATTTTGAAGGAAATAAAAGCGAAGGATGATCCGCATGTCCTTTATGTGATCCACTCCAGTGATTCGAGATGCGGGCATACCAACTAG

Network for GWHGAAEX002540

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17177.3	PPR_long	424	572	3.20E-10
PF01535.19	PPR	582	602	0.024
PF01535.19	PPR	618	640	0.45

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	23.060
SRP064423	SRR2545915	Juvenile tuber	23.220
SRP108465	SRR5643513	five period of Gastrodia elata	8.680
	SRR5643514	five period of Gastrodia elata	9.060
	SRR5643515	five period of Gastrodia elata	9.720
	SRR5643524	five period of Gastrodia elata	8.820
	SRR5643525	five period of Gastrodia elata	8.280
	SRR5643528	five period of Gastrodia elata	3.410
	SRR5643658	five period of Gastrodia elata	5.320
	SRR5643659	five period of Gastrodia elata	9.840
	SRR5643660	five period of Gastrodia elata	9.930
	SRR5643661	five period of Gastrodia elata	9.820
	SRR5643662	five period of Gastrodia elata	9.280
	SRR5643663	five period of Gastrodia elata	10.120
	SRR5643664	five period of Gastrodia elata	8.540
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	15.380
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	9.460
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.910
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	17.010
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	22.460
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	26.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	17.500
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.340
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.590
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.590
SRP279888	Gastro	Gastrodia elata tuber	17.71
	Juven	Juvenile tuber	22.69
	Mother_Gastro	Mother tuber of Gastrodia elata	10.10
	Mother_Juven	Mother tuber of Juvenile	18.46