Detail information of GWHGAAEX002544/evm.TU.scaffold_121.5
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|434399140|ref|YP_007133144.1| | 5.00E-24 | amino acid ABC transporter substrate-binding protein, PAAT family [Stanieria cyanosphaera PCC 7437] |
| KOG | KOG1052 | 0 | Glutamate-gated kainate-type ion channel receptor subunit GluR5 and related subunits |
| nr | gi|672183939|ref|XP_008812267.1| | 0 | PREDICTED: glutamate receptor 3.7 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q9SDQ4|GLR37_ARATH | 0 | Glutamate receptor 3.7 (Precursor) |
| trEMBL | tr|M0SUK3|M0SUK3_MUSAM | 0 | Glutamate receptor {ECO:0000256|PIRNR:PIRNR037090} |
| TAIR | AT2G32400 | 0 | glutamate receptor 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 133272 | 216488 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002544
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01094.27 | ANF_receptor | 53 | 405 | 6.10E-78 |
| PF00497.19 | SBP_bac_3 | 481 | 809 | 2.20E-25 |
| PF00060.25 | Lig_chan | 590 | 842 | 1.80E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0007186 | Biological Process | G-protein coupled receptor signaling pathway |
| GO:0015276 | Molecular Function | ligand-gated ion channel activity |
| GO:0004930 | Molecular Function | G-protein coupled receptor activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 68.990 |
| SRR2545915 | Juvenile tuber | 88.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 31.070 |
| SRR5643514 | five period of Gastrodia elata | 33.920 | |
| SRR5643515 | five period of Gastrodia elata | 34.070 | |
| SRR5643524 | five period of Gastrodia elata | 30.980 | |
| SRR5643525 | five period of Gastrodia elata | 43.440 | |
| SRR5643528 | five period of Gastrodia elata | 35.530 | |
| SRR5643658 | five period of Gastrodia elata | 45.220 | |
| SRR5643659 | five period of Gastrodia elata | 45.680 | |
| SRR5643660 | five period of Gastrodia elata | 54.970 | |
| SRR5643661 | five period of Gastrodia elata | 51.950 | |
| SRR5643662 | five period of Gastrodia elata | 37.410 | |
| SRR5643663 | five period of Gastrodia elata | 43.850 | |
| SRR5643664 | five period of Gastrodia elata | 37.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 64.550 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 45.430 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 59.240 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 72.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 79.400 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 90.940 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 67.810 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 72.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 54.170 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 60.240 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 70.74 |
| Juven | Juvenile tuber | 34.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 16.20 | |
| Mother_Juven | Mother tuber of Juvenile | 15.89 |