Detail information of GWHGAAEX002546/evm.TU.scaffold_121.7
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|328543334|ref|YP_004303443.1| | 1.00E-38 | DNA methylase [Polymorphum gilvum SL003B-26A1] |
| nr | gi|159461700|gb|ABW96889.1| | 0 | CMT-type DNA-methyltransferase [Elaeis guineensis] |
| Swissprot | tr|Q9AXT8|CMT1_MAIZE | 0 | DNA (cytosine-5)-methyltransferase 1 |
| trEMBL | tr|B4XTS9|B4XTS9_ELAGV | 0 | Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417} |
| TAIR | AT1G69770 | 0 | chromomethylase 3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 280921 | 292609 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002546
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01426.17 | BAH | 217 | 326 | 5.20E-06 |
| PF00385.23 | Chromo | 481 | 518 | 3.20E-09 |
| PF00145.16 | DNA_methylase | 528 | 889 | 3.20E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00558 | DNMT1, dcm | Metabolic pathways | map01100 |
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008168 | Molecular Function | methyltransferase activity |
| GO:0003682 | Molecular Function | chromatin binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 6.820 |
| SRR2545915 | Juvenile tuber | 14.190 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.610 |
| SRR5643514 | five period of Gastrodia elata | 26.860 | |
| SRR5643515 | five period of Gastrodia elata | 18.020 | |
| SRR5643524 | five period of Gastrodia elata | 21.550 | |
| SRR5643525 | five period of Gastrodia elata | 1.760 | |
| SRR5643528 | five period of Gastrodia elata | 1.940 | |
| SRR5643658 | five period of Gastrodia elata | 3.010 | |
| SRR5643659 | five period of Gastrodia elata | 5.080 | |
| SRR5643660 | five period of Gastrodia elata | 5.390 | |
| SRR5643661 | five period of Gastrodia elata | 4.820 | |
| SRR5643662 | five period of Gastrodia elata | 3.790 | |
| SRR5643663 | five period of Gastrodia elata | 7.850 | |
| SRR5643664 | five period of Gastrodia elata | 2.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 27.740 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 44.020 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.650 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.480 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.940 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 26.140 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 36.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 25.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.480 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.480 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.81 |
| Juven | Juvenile tuber | 11.54 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.25 | |
| Mother_Juven | Mother tuber of Juvenile | 2.13 |