Detail information of GWHGAAEX002548/evm.TU.scaffold_121.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428305857|ref|YP_007142682.1|7.00E-6250S ribosomal protein L6 [Crinalium epipsammum PCC 9333]
KOGKOG32541.00E-107Mitochondrial/chloroplast ribosomal protein L6
nrgi|743877218|ref|XP_010907839.1|2.69E-114PREDICTED: 50S ribosomal protein L6, chloroplastic [Elaeis guineensis]
Swissprottr|O23049|RK6_ARATH4.00E-10850S ribosomal protein L6, chloroplastic (Precursor)
trEMBLtr|D7TEL8|D7TEL8_VITVI2.00E-113Putative uncharacterized protein {ECO:0000313|EMBL:CBI28941.3}
TAIRAT1G051901.00E-107Ribosomal protein L6 family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000125299642318288+
Transcript Sequence

Network for GWHGAAEX002548

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module8

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00347.22Ribosomal_L6551271.60E-11
PF00347.22Ribosomal_L61352091.40E-17
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02933RP-L6, MRPL6, rplF Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0019843Molecular FunctionrRNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms58.510
SRR2545915Juvenile tuber57.380
SRP108465SRR5643513five period of Gastrodia elata11.020
SRR5643514five period of Gastrodia elata13.220
SRR5643515five period of Gastrodia elata10.940
SRR5643524five period of Gastrodia elata10.950
SRR5643525five period of Gastrodia elata10.710
SRR5643528five period of Gastrodia elata3.540
SRR5643658five period of Gastrodia elata5.230
SRR5643659five period of Gastrodia elata26.650
SRR5643660five period of Gastrodia elata30.200
SRR5643661five period of Gastrodia elata23.660
SRR5643662five period of Gastrodia elata28.510
SRR5643663five period of Gastrodia elata28.230
SRR5643664five period of Gastrodia elata35.020
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.860
SRR6049655Rhizomagastrodiae_C368-T10_good_121.750
SRR6049656Rhizomagastrodiae_C368-T07_good_119.860
SRR6049657Rhizomagastrodiae_C368-T07_good_124.010
SRR6049658Rhizomagastrodiae_C368-T04_good_123.030
SRR6049659Rhizomagastrodiae_C368-T04_good_123.650
SRR6049660Rhizomagastrodiae_C368-T01_good_122.090
SRR6049661Rhizomagastrodiae_C368-T04_good_123.320
SRR6049662Rhizomagastrodiae_C368-T01_good_125.490
SRR6049663Rhizomagastrodiae_C368-T01_good_123.340
SRR6049664Rhizomagastrodiae_C368-T10_good_118.690
SRR6049665Rhizomagastrodiae_C368-T10_good_118.690
SRP279888GastroGastrodia elata tuber 37.62
JuvenJuvenile tuber16.68
Mother_GastroMother tuber of Gastrodia elata 5.31
Mother_JuvenMother tuber of Juvenile 8.07