Gene detail

Detail information of GWHGAAEX002549/evm.TU.scaffold_121.10

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2211	Predicted Golgi transport complex 1 protein
nr	gi\|743794668\|ref\|XP_010924233.1\|	PREDICTED: conserved oligomeric Golgi complex subunit 5-like isoform X1 [Elaeis guineensis]
trEMBL	tr\|M0SCY9\|M0SCY9_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P08720_001}
TAIR	AT1G67930	Golgi transport complex protein-related

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	319299	325866	+

Transcript Sequence
>GWHTAAEX002549 CTGATTTAAGTCATTCACTGACAAACCATCTGTATCATCTTTCCATTCACCGCATCTGTTTGCGCCTCCGTTTGGAGGGTCGCCGCTTCGCCAGCCATGGCGTCTCCGCGAATTCTCCCAGCTTCTCCTCTTCAGAGGCTCACCACATTCAAGGAATCAAACCCTAATTCGTCTGCTGTCGGCGCCCTCGCTACACCCGCACCATCTCCCCTCGAGACCTTCGCCTCAGATCCCATCTTCTCCGCCTTCCTCTCCCACGACTTCGATTGCGCCCGCTTCTCCTCCCAAGCTCTAAGCTCTGGATCCGCAGCTGCTCGTGCAGAAAACTTGCAGGAAGCCATCTGCCTCCTCCAAAAGCACCTCCGATCAGAAGTCCTGGATCGCCACCCCGCCCTCCTCTCCCAACTCTCTTCCCTCAACGAAGCGGAAGCCTCCCTCTCGTCTGTGCGCTCCACTGTCTCATCTCTTCAGTCCTCCCTCCTTCGCTCTCGCCAGGAACTCGCCGATCCCCTCCGCCTCGTCCGTTCCCACACTATCCAGCTCTCAAATCTCCATTCCGCTGCAGATCTCCTCAGCTCTTCTGCTCGCCTCCTCCGTGTTTCCAAAAAGCTTCGCGATGTCATGTCCCAACCTGCCGATCGTCTTGATCTCGCTAAGGCCGCTGAGATGCACCGCGATATCGAGCTGCTTTACCAGGAGCGCGGTCTCGCTGGAATCTCCGTCGTTGAGGACGAGATCCGATGGCTCTCGGAGACGGGGAATCGGCTGCGCTCTCAAGCGATGAAGGCAGTCGAAAGAGGTATGGACGAACATAACCAGAATGATATATGGTGCGGTCTTCAAGTGTTTTACAATCTGGGCGAGTTGAGATCGACTGTGGATCAATTAGTGAACAAGTATAAGGCGTCAGGAGTGAAATGCGTTGGAGCTGCGCTGGATGTGAAGGCGATTTCGGCAGGGACGGGAGGGGTGCAGAGGAGCGGTGCCCCTCCAATCGGGGCAGGGAAGAGGGCCGGAGAGCCTCTCTGGGAGAGGATGGGGCGATGCATGGATGATTTGCATAAGTTGATGACTGCAGTTTGGCAGTTGCAGTCTGTTCTGTCCAAGAAGAGAGTTCCATTTACCCAGGTTTTGTTCCTGCATGAAGTCTGGCAAGAGGGCGAACCTCTTTTAACTGATAGAGTTTGGACTGCTCTAGTAAAATATTTTGCAAGCCAAATGAAATCAGCATTCAACACTTCAAGCTTTGTCAAAGAAGTATTTACAGTTGGATACCCAAAACTATTCACTATGATTGAGAACCTTCTTGAAAGGATTTCACGCGACACTGATGTAAAAGGAGTACTTTCTGCTCTTACTCTTGAAGGAAAGGATGAAATGATTGCAGCCTTAAATATATTTCAGACATCCTTTCTTGCTCTCTGTCTTGGCCGCCTTACGGATTATGTTAATAGTATTTTTTCAGTATCAGGCCGGGGCACTGTTCCATCAAAGGATCAGATCTCAAGACTTATACTGCGAATTCAAGAGGAGATAGAAGCTGTTAAACTGCATAGGCGTTTGATGCTTCTTGTTCTTCATGAAATTGGCAAAGTTCTACTTTTGGTAGCAGAGAAAGCTGAATACCAGATATCGGCGGGTCCGGAAAGCCGTCAAGTAACCGGTTCAGCAAACCCGGCCCAGCTGAAGAACATGACCCTGTGCCAGCAACTGGAGGAGATCCACGCCCGTGTTTCCGCGTCTCTTCCGCCGGACGCGTCGGAGATCCTTTCGCCGTCGCTGGGCGCCATCCACGGCGTGGCCTGCGAGTCAACGGCGCCGCTCTTCCAATCGATGCTGGACCGGCTGGAGTCGTGCGTCCTCGGGATCCACGGTCAGGATTTCTCCTCTTCCGACAACAGCGCGTCGCCATACATGGAGGAGCTGCAGAGGTGCGCGGCGCACTTGCGCGCGGAGTTCCTGCCAACGGTGGCGCCGCCGCTTGTCCGGCGAATGGCCGCCCGCGTGGTGGCGTTCTTCCTGAGACATGCTGCGCTGGTGCGGCCGCTGTCGGAGGAGGGAAGGCTGAGGCTGGCTAGGGACATGGCGGAGCTGGAGCTGGCCGTGGGGCAGAACCTGTTTCCGGTGGAGCAGCTAGGGGCGGCCTACAGGGCGCTGCGGGCCTTCCGGCCGATGATATTTCTGGAGACGGAGAAGCTTCAGGAATGGCCGCTGCTCTGGGATCTGCCGGCGGCCGACGTGCTGCACCACCTGTATTCCCGAGGGCCTGATCGGCTGCTGTCCCCCATGCAGCGGAACGGTCTGACTCCGGTTCAGTACTCGCTGTGGCTGGACTCGCAGGGGCAGCATCAGGACCAGCTCTGGAAGGAAATTAAGGCCACCCTCGATCACTATCAGGCCACCGTTGGTGATCTCACCGGCCCCGTCTTTTCTCTCATGCTTCACATTGGCTCCGCCATCTCATCGTCGTCTTCTTCTTCTTCTTCTTAGTTTTCAGTGTACTTTTTTTTTCTTATTTATTTATATATTATATAATAGTATTATGAAATGAAAAAAGTTATTAGACCCTAAAAAAAGTTTAATGTAAAATTAAAGAGATGTGAATTTCACGTGGAAGTGCATTGAGCTATTTCATTAATATCTACGCTGGTTCCTATTTTAGGCAAAGCAGATGTTAAAATATTTTCTTGCTGATAAATAATTATGAACAAAAATAAGGTATTTGTCGG

Network for GWHGAAEX002549

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10392.8	COG5	49	172	7.60E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006891	Biological Process	intra-Golgi vesicle-mediated transport
GO:0017119	Cellular Component	Golgi transport complex

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.010
SRP064423	SRR2545915	Juvenile tuber	14.330
SRP108465	SRR5643513	five period of Gastrodia elata	30.360
	SRR5643514	five period of Gastrodia elata	27.630
	SRR5643515	five period of Gastrodia elata	25.140
	SRR5643524	five period of Gastrodia elata	25.860
	SRR5643525	five period of Gastrodia elata	33.060
	SRR5643528	five period of Gastrodia elata	34.570
	SRR5643658	five period of Gastrodia elata	39.490
	SRR5643659	five period of Gastrodia elata	24.360
	SRR5643660	five period of Gastrodia elata	26.050
	SRR5643661	five period of Gastrodia elata	25.950
	SRR5643662	five period of Gastrodia elata	20.630
	SRR5643663	five period of Gastrodia elata	20.440
	SRR5643664	five period of Gastrodia elata	23.620
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.050
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.450
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.020
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	27.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.940
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	26.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	35.070
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	32.170
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.250
SRP279888	Gastro	Gastrodia elata tuber	27.72
	Juven	Juvenile tuber	40.62
	Mother_Gastro	Mother tuber of Gastrodia elata	28.84
	Mother_Juven	Mother tuber of Juvenile	31.51