Gene detail

Detail information of GWHGAAEX002552/evm.TU.scaffold_121.13

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|672167349\|ref\|XP_008803631.1\|	1.41E-62	PREDICTED: zinc finger CCCH domain-containing protein 55-like [Phoenix dactylifera]
Swissprot	tr\|Q6YYC0\|C3H55_ORYSJ	4.00E-55	Zinc finger CCCH domain-containing protein 55
trEMBL	tr\|K3YG53\|K3YG53_SETIT	6.00E-60	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Si013221m}
TAIR	AT3G18640	4.00E-30	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	374849	413615	+

Transcript Sequence
>GWHTAAEX002552 TAAGGGCCGCGAATAGCCGGGGCTTATCTCATCATTTCCATCTTAAGTATCGCCTTCACTATCCAGTGTTTCGTGTTCCACCTAACCGATTCTCTTTGGCGACACGGTCTGCATTAGCAGAGGTCGAGCTTCTCGGCCACTCGATCGCAGGCGAGACCGCGATCACGCCTATCCTCGTCTCATATAAGGCTAGCATATCGCAGACAGCACAGACTTCATTGGGTCTGTGGCTTGGCACAGATCAGGCATCAGCGGTTGATCTGTTCAGAGGAAGGATTAGGATAGTATTTCAATCTTTCAGGAGAAGTTGGCTCCGAGTTTGTACGGATGTGGAAAGTGCATTCTGTTAATTTAATCAAAACTTAAATCTATATACTCTCTGCAATGGCTGAAAAATTAAGAAGACGGTCATCAAAATGGGACGTGTCAGCAGAACAATATGTGGCGACTGAAATTGGGCACGGCATTGCTCCAATAGCAAAACTTGATTTTTGTATGGATCACACAAAACTGGATTCAACAAAGCCTATCGCATCTATGAATATAGAGAGTTCTGAAATAGATCAAGTTGCCATTCGATCTAAAGAGGAAGGTGATTACAAAAATGGTTTCAAAACGCTGGATTGGAAAGCTGTCTCTCAAGACAGAATGATGACAGAGTATGCTGATAATGAGGACAAACCACACGATGTAGCTTATGATATGCCTCCTGGTTTTGAAGAAGGGCATCAGGATTTGGAGCCTGTCTCTCAAGAAAGAGTGATGGCTGAAAATAATGAGGCTGAAGACAAACTAGATGAGGCTTATGATATGCCTCCTGGTTATGAAGAAATGCATCAGATAACCAATTTGTCCCCAACCCAATATTCCAATCAATTTAATCTGGATGGTAGCAATGATACTTTCATGAAACAAGATTGGGAACCTGCTTCTCAAGAAAGACCCATGACCGATGTTGAGAATCGGGATATGCCACAGAAAGCTTCTTATGATATGCTGCCTGGCTATGAAGAAATGCATCAGATGACTCCCAATATATCCCCGACTGAATATCCCAAGAATTTTGATCAAGAAGGCAGCTTCAAAGAGGGTCTCAAAAAGCAAGTTGGGGAGCCGGGCAGGAATATCATAGAATACGCTGAGTGTCTAGACAAATCAGTCAAGGCGGCCTATGATATGTCTCCTGTTCTTGAAGAAATACATCAGAGGACTCATTATATGTCCCCGACACAATGCTCCAAGCTATCTCATTCAGTAGATGGTTGCAGAGATGATTTCAATAAGCAAGATAGTGAACCTAACCCTAAAAACAAAACCATGTCTGCAAATACAAAAAATCAGGACAAACCCCTTACGGCTGAATTTGACATGTCTCCTCTTTCCGAAAAAAGGCATCGGAGGAGTCACAATCTATCCTCAATTGATGACCGAAGTAGATCTCACAGGAGCAGGAGCAGGAGCAGGAGTGCTTCCTATGTCTCCAGACAAGTTTTCGAAAGGCGGACAGACATAGGCAGAACACGAGGAATGACCCCAGCATGTAGAGATTTTGCTGCCAGCAGGTGTAGATTTGGAAGTCGATGCAGGTACCTTCATGAAGGTGATAGCCGGAGGGAGAGAGAGAGACGCCCCACATATGGAAGTAGGGATAGTCCTACCGTTTCGATTGAGAAAAACAACCGTTCTCAGGAAAAGTTTTCTAGGAGGCTTGAGGAACACTCTAAAGATGAACGGCATGATCCACGCCGAGCTTCCAACTCCAATGAAAAGTGTTTTGATTTCACCCAAGGCAGATGCTACAGAGGGGAGTCCTGCATATTCGTACATCACGATGCGTTGTCCTATGGTGGGCGTGAGAGAGATGAATCTAGAGGAATAGCCCATGATAGAAGGGGTGTTGGAAGTGCTTCTCTCAGTCATAAGCCTCTCTGCAAGTTCTTCTTAAGAGGTAATTGCCTTCACGGCGATGACTGCAAGTTTCTTCATCAGGTTGGGCTGCCCATTATTTCTGCCGAAAAGTCTTTTGACAGTCCTAATAACATTACATCCACAAACAATACAAAACCACACAATCAAACCCACATCTCCAGTGTTGCTAAGAATGATCCGAGACTTGTCGATATCGCAACTGCAGATAAACAAATTTTCCCAAACAGATTTACTCCAGATGCTCATAAAGAAACAAAGCCTTCCAGACAGCAGGTGCCTGCACAAAGAGCCCCCGGACTGCTTTCTTCTGCCGATAATCCTATTCCCTCAATTTCGATCCCCGGCGAAAATGCTGAGCATTGTGCGCAGAACCAATTTGGTCCTCAGCTTCTGCACACCCAAAGCTTTGCTCAGAATCCTTCCTTTCAGCAGTTTGTCCCTCCGCTCACCTTGAGTCGGCAGTTACAACAAGTCATGCCCTCTCATCCTCTGAAAGGGCAAAATCAGTTTGTGGATCTTCAGAAACCACAAAATCTTGACTCTATCGGGCAGAAAATTCAACAAAATATCGTCATGTTGGCACGTGGTGGCAGCAACTTCAGCCTTAATGGACAAGCCCAACTGAGCGTGCCAGTTATCCATAATGTGCAGACCCGGCCGGCAAATCTTGCCGCCGATCTTCAGCAAATTGTCTCTTCAAATGCGCAGAGCCAGGCGCAGAACAACCCTCTGCATGTCCCTCAGCCTTCTCCAAATCCGCAGATTGCGAACTCAGACGAGAAAAATCATCCATTAACAAATCCATTGCAGATCAGCCAAGCAACAGACTCCAGTGCATCCATTGCTCAAAAGATCGTAACGAGCGAGCAAGCCGCCAAAATAACGGATCTTTCGGCGTCATTGGCACACTTCTTCGGCACTGCTGCCCTGAATTCGCAATCTCACACATTACTAAACCCGAATTCCGTCACCCCTTTCGCCTTGCCAGAGAAACCACCGAATCCTCAGGCGCATGCTATCAAGAATGTTCAGCAGGTAGCCGTCGATTCCTCGGGAGCTAGGCCAGAGAAAATCGATGCTGCCGAGCCGCAGAATGCGGAGGAAGAGGGGGGGAAGGACGGGGACGGCAAGAAGATCAAAGAAACAAAGGAGATCAGGCTATTCAAGTGCGCCCTCATCGAGTTTGTAAAGGAGATGCTGAAGCCCAAATGGAAAGAGGGTCAGCTGAGCAAAGAGGCTCACAAAACCATTGTGAAGAAGGTTGTTGACAAGGTGTCCGGTTCTTTGCAGGCTCCCAATATTCCTCATACTCAAGAAAAAATCGATCTCTATCTCTCCCACTCTAAGGCCAAGCTCAGCAAGCTTGTGCTGGCTTATGTGGAGAAGTATGTGAAGAGCTAGATAGCTATCAGCAAAGAATAGGTTAAGAGGCATTTTACTTCTACAAGAGATTTATTTTGGGGGTACTTACCATAGAGGCGCATCTCTTGTATCATAAAAAAAAAGCATTGCTTCTGCTATCCTCCAAAGTAATTGCCATCTAACATATTATCGACAAAAAAATAGGGTAATCAAACCTGCATTGGACATAACCAGCTGGTTCAACCGGTCCAACCCAGATTCAAATGTGGCTAGGTTTGATTCAGAGGGCTTTTCTCGGCTTCAGTTGACATGTTGACCCAATCGAAACAGGTATATTAGGCTTTTGTTGTTTTAATGAATTGGGTGGTTGTGTTCTAGTTTTTTATTATTTCTAGCATATCAGTAATATAGAATTTGGGTGTTTGGATCATTATTTTTAGAAAATTAGTTTGTTTTAATAAAGTGTTTGATCGAAGGTATAAATTTATGCAATTTTATTTGCAAAAATTTATGCCTATAATGCATAAATCTCAAGCAATAACATTTTGAACTCTGGCATCAACTTTTCAAAATAAATTTTAAATTAAG

Network for GWHGAAEX002552

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.23	zf-CCCH	514	534	3.40E-05

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.660
SRP064423	SRR2545915	Juvenile tuber	24.810
SRP108465	SRR5643513	five period of Gastrodia elata	12.140
	SRR5643514	five period of Gastrodia elata	9.080
	SRR5643515	five period of Gastrodia elata	9.750
	SRR5643524	five period of Gastrodia elata	9.550
	SRR5643525	five period of Gastrodia elata	14.240
	SRR5643528	five period of Gastrodia elata	11.280
	SRR5643658	five period of Gastrodia elata	14.080
	SRR5643659	five period of Gastrodia elata	15.420
	SRR5643660	five period of Gastrodia elata	16.510
	SRR5643661	five period of Gastrodia elata	12.770
	SRR5643662	five period of Gastrodia elata	15.690
	SRR5643663	five period of Gastrodia elata	16.440
	SRR5643664	five period of Gastrodia elata	17.920
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	17.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	16.430
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	13.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.130
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.760
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.690
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	18.270
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.390
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	11.540
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	14.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.660
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.660
SRP279888	Gastro	Gastrodia elata tuber	18.80
	Juven	Juvenile tuber	41.71
	Mother_Gastro	Mother tuber of Gastrodia elata	12.68
	Mother_Juven	Mother tuber of Juvenile	29.00