Detail information of GWHGAAEX002558/evm.TU.scaffold_121.20


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|268316381|ref|YP_003290100.1|2.00E-40endoribonuclease L-PSP [Rhodothermus marinus DSM 4252]
KOGKOG23178.00E-75Putative translation initiation inhibitor UK114/IBM1
nrgi|672172611|ref|XP_008806405.1|8.76E-90PREDICTED: ribonuclease UK114 [Phoenix dactylifera]
Swissprottr|Q94JQ4|RIDA_ARATH2.00E-75Reactive Intermediate Deaminase A, chloroplastic {ECO:0000303|PubMed:25070638} (Precursor)
trEMBLtr|W9R0G1|W9R0G1_9ROSA3.00E-85Uncharacterized protein {ECO:0000313|EMBL:EXB50309.1}
TAIRAT3G203908.00E-75endoribonuclease L-PSP family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000125571010583698+
Transcript Sequence

Network for GWHGAAEX002558

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01042.20Ribonuc_L-PSP681841.20E-40
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
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Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms95.080
SRR2545915Juvenile tuber169.030
SRP108465SRR5643513five period of Gastrodia elata181.170
SRR5643514five period of Gastrodia elata252.450
SRR5643515five period of Gastrodia elata189.890
SRR5643524five period of Gastrodia elata245.560
SRR5643525five period of Gastrodia elata57.220
SRR5643528five period of Gastrodia elata67.260
SRR5643658five period of Gastrodia elata59.020
SRR5643659five period of Gastrodia elata66.790
SRR5643660five period of Gastrodia elata57.980
SRR5643661five period of Gastrodia elata71.170
SRR5643662five period of Gastrodia elata130.350
SRR5643663five period of Gastrodia elata94.310
SRR5643664five period of Gastrodia elata113.280
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1225.200
SRR6049655Rhizomagastrodiae_C368-T10_good_1268.420
SRR6049656Rhizomagastrodiae_C368-T07_good_1267.180
SRR6049657Rhizomagastrodiae_C368-T07_good_1204.220
SRR6049658Rhizomagastrodiae_C368-T04_good_1193.470
SRR6049659Rhizomagastrodiae_C368-T04_good_1148.240
SRR6049660Rhizomagastrodiae_C368-T01_good_1173.250
SRR6049661Rhizomagastrodiae_C368-T04_good_1213.300
SRR6049662Rhizomagastrodiae_C368-T01_good_1239.750
SRR6049663Rhizomagastrodiae_C368-T01_good_1220.710
SRR6049664Rhizomagastrodiae_C368-T10_good_1231.050
SRR6049665Rhizomagastrodiae_C368-T10_good_1231.050
SRP279888GastroGastrodia elata tuber 128.64
JuvenJuvenile tuber67.40
Mother_GastroMother tuber of Gastrodia elata 27.64
Mother_JuvenMother tuber of Juvenile 22.93