Detail information of GWHGAAEX002561/evm.TU.scaffold_121.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|83309865|ref|YP_420129.1|5.00E-104glycine cleavage system aminomethyltransferase T [Magnetospirillum magneticum AMB-1]
KOGKOG27700Aminomethyl transferase
nrgi|743885509|ref|XP_010909941.1|0PREDICTED: aminomethyltransferase, mitochondrial [Elaeis guineensis]
Swissprottr|P54260|GCST_SOLTU0Aminomethyltransferase, mitochondrial (Precursor)
trEMBLtr|E5GC65|E5GC65_CUCME0Aminomethyltransferase {ECO:0000256|RuleBase:RU003981}
TAIRAT1G118600Glycine cleavage T-protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000125598513603685-
Transcript Sequence

Network for GWHGAAEX002561

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01571.20GCV_T422971.10E-87
PF08669.10GCV_T_C3073981.40E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K00605gcvT, AMT Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Pyrimidine metabolismmap00240
One carbon pool by folatemap00670

Gene Ontology

GO term OntologyName
GO:0006546Biological Processglycine catabolic process
GO:0004047Molecular Functionaminomethyltransferase activity
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms46.990
SRR2545915Juvenile tuber50.960
SRP108465SRR5643513five period of Gastrodia elata88.060
SRR5643514five period of Gastrodia elata82.420
SRR5643515five period of Gastrodia elata76.060
SRR5643524five period of Gastrodia elata76.890
SRR5643525five period of Gastrodia elata101.490
SRR5643528five period of Gastrodia elata74.990
SRR5643658five period of Gastrodia elata98.210
SRR5643659five period of Gastrodia elata97.700
SRR5643660five period of Gastrodia elata107.050
SRR5643661five period of Gastrodia elata111.890
SRR5643662five period of Gastrodia elata104.940
SRR5643663five period of Gastrodia elata100.890
SRR5643664five period of Gastrodia elata124.780
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_196.060
SRR6049655Rhizomagastrodiae_C368-T10_good_190.960
SRR6049656Rhizomagastrodiae_C368-T07_good_1103.820
SRR6049657Rhizomagastrodiae_C368-T07_good_1111.000
SRR6049658Rhizomagastrodiae_C368-T04_good_196.370
SRR6049659Rhizomagastrodiae_C368-T04_good_1104.210
SRR6049660Rhizomagastrodiae_C368-T01_good_1109.220
SRR6049661Rhizomagastrodiae_C368-T04_good_199.000
SRR6049662Rhizomagastrodiae_C368-T01_good_192.340
SRR6049663Rhizomagastrodiae_C368-T01_good_198.790
SRR6049664Rhizomagastrodiae_C368-T10_good_190.230
SRR6049665Rhizomagastrodiae_C368-T10_good_190.230
SRP279888GastroGastrodia elata tuber 121.97
JuvenJuvenile tuber133.03
Mother_GastroMother tuber of Gastrodia elata 61.38
Mother_JuvenMother tuber of Juvenile 70.53