Gene detail

Detail information of GWHGAAEX002565/evm.TU.scaffold_121.27

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|298293565\|ref\|YP_003695504.1\|	2.00E-59	amidase [Starkeya novella DSM 506]
KOG	KOG1211	5.00E-143	Amidases
nr	gi\|694999980\|ref\|XP_009409633.1\|	0	PREDICTED: translocon at the outer membrane of chloroplasts 64 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9MUK5\|TOC64_PEA	0	Translocon at the outer membrane of chloroplasts 64
trEMBL	tr\|M0S1T7\|M0S1T7_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P21290_001}
TAIR	AT5G09420_1	5.00E-143	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	670906	717240	+

Transcript Sequence
>GWHTAAEX002565 AAAGATACGTATAAAGCTTTCCATTTCTAGGTTTTGTTTTTTTAAAGGAAAATGCTCCGTAGAGTACTCCTCCCTCTTTTCCGCCTCCTGCTTGCACTGAATAGAAGTTAGGATATAACTAGTGGCAGAGGAAGAAAATCATTTATTTACGAAGAGAGAGATTGAGAGGAGAGGATTGATGTCTGCGAACCCTAATCTATGGGTTCTTCTGGGTCTGGGCATCGCCGGTATATTCATCATGACCCGTAAACTAAGGCGGGTTATCAGGGAGGATTTTGGCGCTTTTGTTGAGCGGTTTGAGCTCCTCCCTCCTCCACAGCCCGCTCCTCCCAAGGCTCCTCATCCCCTAACTGGCCTCACATTTGCCGTAGCAGATGTATTTGATATTGACGGATATGTAACGGGGTTTGGCAATCCAGACTGGGCAAGAACACATGAAGCTGCAATGTCCACTGCTCCTTTGGTTGCCACCCTCATAGATGGAGGTGCTACGTGTGTTGGTAAAACTGTCACTGATGATATGGCTTTTAGCTTAAGTGGTGAGAATAAATATCTTGGCACACCAACGAATCCAAAGGATCCTGACCGGGTACCTGGTGGATGTTCAAGTGGGTCGGCTGTGGTTGTTGCTGGAGGCATAGTTGATTTTGCATTGGGAATGGACACCATAGGTGGTGTGAGAGTTCCTGGAGCTTTTTGTGGCGTTCTGGCTTTTAGACCATCGCATGATTCCATCTTGAAGAATGGTGTTCTTCATGTCTCTCCAAGTTTGGACGTCCCTGGGTTGTTTGCTAAGGATCCTAGTGTTTTGCGTCGGGTTGCACATGTGTTACTTAAACTTCCATATGCTGCTGTACGCCAACCTAGCCGTGTTTTAATAGCTGATGATTACTTTGAATTGATGAAAGATTCTTCTAAAAGAACAATTGAAGCGGTAACCAAAACTGTGGAAGCTCTATATGGGAGGCAATGCTTGAGCCATGTCAATGTTGGTGAATATCTTGCGTCCAAGATTCCTAGTTTAAAAATGTTACAAGTCAGAACTGTTGGCAGCGATTTAAAAATATCTTCATTAACATCACTTACTAGTGCCATGAGATTGATTCACAAGCATGAATTCAGAAGTAGTTATGAGAATTGGATAAACTCTGCCAAGCCAACTATATCTTCTTGTGTATCAAATAATTTGAGTACTTCAGCTGATGAAAATGACATTTCTATTAACTATTGCCAAACTGCAAGACGTGAAGCTCAACTGGCTGTTCATTCTCTTCTGAAGGACGATGGCATTCTTATACTTCCCACAGTGTCAGGTCCTCCTCCAAAACTCAACTCAAAAGAAATTCTATCTGAAGATTATCAAACCTGCTTGTTAAGTCTCTCAGCTATTTCAAGCATGTCTGGTTGTTGTCAGGTAACAATTCCCTTAAGATTCCATGGAAAGGTTCCTCTGTCAGTGTCCGTGATTGCAAGGCATGGTGGTGACCGTTTCCTGCTCGACACTGTTCAGAAAATGTTCTCCGTTCTTCAAGAGCAAGCTGATTTAGCCTTGAAACCGGCACAGAGCGCTAGCTCTAGCAAGGAAGAATCTGCAGAAATCGCAAAAGAGAAGGGCAACAACGCATACAAAGAAAAACAGTGGCAGAAAGCTATCAGTCTCTATACAGAGGCAATCAAGCTGAATGAGCAAAATGCTACTTATTATAGTAATCGTGCTGCTGCTTACCTAGAAATGGGAAGCTACCTGCAAGCGGAAGGTGATTGCAACACAGCCATTAACTTGGATAAGAAGAATGTCAAGGCCTTTTTAAGAAGAGGGACTGCACGGGAAATGCTGGGCTATTACAAAGAAGCAATGGAAGATTTCAGATATGCCCTAGTTTTGGAGCCAACGAACAAGACGGCAAGCAGCGCTGCCAATAGATTGAAGAAATTTATACCTTGAATGGTTTCCGGGGATCTCAAACCTCACAACTGCACTTTCAATTTTGGGGTGAATTCTTTCACTTGGTGGAGGCAGTATGCTCAGTACAGTTTTGGCTTCTATATTGAACGGACTTGTGTTGAGAAATATTTATTGAATATTTATCTTTTCTGAGTGGGATGGGTTTCTATTGATATTTATTGAATATTTCTTGCAATTTTTTTAATGTTTTATTTTTGGGGTTATGGAATAAATCATCTTATCTAGTACAGAAGTATCAGTTATTACAAGTCTGTTCATGCAATCGTTATAATAAAAAATGCATATATATATATATATATAT

Network for GWHGAAEX002565

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01425.20	Amidase	50	440	5.70E-43
PF13414.5	TPR_11	479	520	2.10E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	79.190
SRP064423	SRR2545915	Juvenile tuber	68.280
SRP108465	SRR5643513	five period of Gastrodia elata	42.120
	SRR5643514	five period of Gastrodia elata	43.190
	SRR5643515	five period of Gastrodia elata	37.040
	SRR5643524	five period of Gastrodia elata	37.280
	SRR5643525	five period of Gastrodia elata	31.320
	SRR5643528	five period of Gastrodia elata	31.900
	SRR5643658	five period of Gastrodia elata	26.900
	SRR5643659	five period of Gastrodia elata	52.260
	SRR5643660	five period of Gastrodia elata	52.880
	SRR5643661	five period of Gastrodia elata	59.720
	SRR5643662	five period of Gastrodia elata	60.260
	SRR5643663	five period of Gastrodia elata	64.220
	SRR5643664	five period of Gastrodia elata	57.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	53.800
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	57.850
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	54.960
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	57.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	52.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	58.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	59.870
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	55.090
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	53.080
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	55.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	61.770
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	61.770
SRP279888	Gastro	Gastrodia elata tuber	60.53
	Juven	Juvenile tuber	54.93
	Mother_Gastro	Mother tuber of Gastrodia elata	31.95
	Mother_Juven	Mother tuber of Juvenile	46.18