Detail information of GWHGAAEX002566/evm.TU.scaffold_121.28
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|528821549|ref|YP_008362751.1| | 6.00E-23 | Putative calcium-transporting ATPase [Lactobacillus plantarum ZJ316] |
| KOG | KOG0206 | 0 | P-type ATPase |
| nr | gi|743812667|ref|XP_010929488.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: phospholipid-transporting ATPase 2 [Elaeis guineensis] |
| Swissprot | tr|P98205|ALA2_ARATH | 0 | Phospholipid-transporting ATPase 2 |
| trEMBL | tr|A0A061EB12|A0A061EB12_THECC | 0 | Aminophospholipid ATPase isoform 2 {ECO:0000313|EMBL:EOX99483.1} |
| TAIR | AT5G44240 | 0 | aminophospholipid ATPase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 717692 | 789080 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002566
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF16209.4 | PhoLip_ATPase_N | 5 | 69 | 7.60E-24 |
| PF00122.19 | E1-E2_ATPase | 97 | 290 | 2.00E-08 |
| PF13246.5 | Cation_ATPase | 448 | 531 | 1.40E-10 |
| PF16212.4 | PhoLip_ATPase_C | 777 | 1016 | 2.60E-63 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015914 | Biological Process | phospholipid transport |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0140326 | Molecular Function | ATPase-coupled intramembrane lipid transporter activity |
| GO:0000287 | Molecular Function | magnesium ion binding |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 19.270 |
| SRR2545915 | Juvenile tuber | 18.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 14.780 |
| SRR5643514 | five period of Gastrodia elata | 14.910 | |
| SRR5643515 | five period of Gastrodia elata | 16.750 | |
| SRR5643524 | five period of Gastrodia elata | 16.450 | |
| SRR5643525 | five period of Gastrodia elata | 21.700 | |
| SRR5643528 | five period of Gastrodia elata | 18.990 | |
| SRR5643658 | five period of Gastrodia elata | 22.070 | |
| SRR5643659 | five period of Gastrodia elata | 10.640 | |
| SRR5643660 | five period of Gastrodia elata | 10.050 | |
| SRR5643661 | five period of Gastrodia elata | 11.200 | |
| SRR5643662 | five period of Gastrodia elata | 11.900 | |
| SRR5643663 | five period of Gastrodia elata | 11.880 | |
| SRR5643664 | five period of Gastrodia elata | 11.830 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 15.540 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 16.510 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 16.470 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.300 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 17.510 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.240 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.260 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 17.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 17.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 19.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 15.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 15.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 14.42 |
| Juven | Juvenile tuber | 23.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 27.44 | |
| Mother_Juven | Mother tuber of Juvenile | 33.84 |