Gene detail

Detail information of GWHGAAEX002574/evm.TU.scaffold_121.36

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|521465564\|ref\|YP_008152792.1\|	7.00E-20	hypothetical protein SCE1572_32035 [Sorangium cellulosum So0157-2]
KOG	KOG0596	2.00E-172	Dual specificity; serine/threonine and tyrosine kinase
nr	gi\|672118287\|ref\|XP_008782351.1\|	0	PREDICTED: 3-phosphoinositide-dependent protein kinase B-like [Phoenix dactylifera]
Swissprot	tr\|Q39008\|M3K1_ARATH	2.00E-20	Mitogen-activated protein kinase kinase kinase 1
trEMBL	tr\|M0SAW8\|M0SAW8_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P01500_001}
TAIR	AT1G77720	2.00E-172	putative protein kinase 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	1077862	1103022	-

Transcript Sequence
>GWHTAAEX002574 ACTTCGTATCAATGTATACCTAGAAATGATTTTTACGGCTGCTTTCTAGCGGCAGGTACTTGCATTCCAAATTCTTATCTCGGAGCACAAGAAGACGCCTTCACCGACACAGTAGAACCACACCGCCTATCCTTCCAGTTTAGCCATGGCCGATTACCAAAGTCCAAATCAGCACTCGCATTCTTGATCTTTCCATTTTCATCCCGCTCTATAAGAAATGCAGGAGCGATCCACCGTCCATGGAGAGGAAGGATAATCTTCCGCAGCAGGTGTCCTCGAACAGCCTTCTTCGCCAGAACAATGCAGGGGTAAATCTAACTCAGTCTTCTTCTTCTTCTTGCTCCTCTGCCAGCCCTCCCGATTTCCTTCAGCAGCTTCAGAACGTTTTGAAGCATCGAAAACCCTTAGCAGCGCGAGCAGCTCGTGTGGGAGGGCCACGTCGGAAACAATCAGTCAGCAGTGATGCATTGGCTCATCCATTAAGCGAAAATAATGCCGGAGCGGGCCAAACCCTAGTAACTGAAGGAGCGGCAAGATTGATTAACGATGCATCTGAAGAAACGGGGGTAGCTCCAGTTGATTCATCTCTCACTCCTCAGTCGAATAGTTGTACCTTGACCGGTGCTCATGAAGAAAAGGCTGAATCGAACCGCTTTGATCTTGATTTAGAGATGGCGGGAGCTCTAAAAAAATTAAAATTGGCGTCCTTTACATTTTCCTCAGAGTTAGAGCATCATGCAGGTCCAACCGGTAATGGAGTGGAGCTTATTCAGCCTGCTTCTTTCAGAGAACCAGAGATGGATGAAGACGTTTCAGGGAATAGGATTATTGTGGATGAGCAGGGTCTTTATCAGCAAGCTGCTCAGTTAATGGAGATGCCTACCTTTGAGATAAATTTTGCTGAAGGCTTGAAGAAGGGGAAAGAACAGAGCCACAACCAGCAATCTCTTCATCCCAAAACACAATCCACACTAGCGCAAACTTCATGTGTAACAGCAATCACTGTACACGATTACCCAATATTACAATGCAATGCTGCTCCTTTGCCAGAGAAGACTGCATTTCCCTCACAAAAGATGGCGCTTGAATCACAGAAAGTAGTTATACCGGATCCTACTCATCTGCATGGTAAAGGAACCATAATTTCTGAACGGTCTTCACCACAGGATAAGCAAGCTCTTCATCACAGTAATGACATAGTAAAGAAAGAATTAGCAGATAATGCCGATTTCTTTCAAGGCCAAACTTCCTCAAAAATTAATCCAACATCAAAACTAGACATCAAACCCCCCCAGCCAAGTGAAACTGAAAAAACTTTTCGGAGAAAGAAACATGACTCCAATGCATATCTTAGTGTCAATGGAAAGATGTATCGAAAGCTTGGAAAAACAGGAAGTGGGGGAAGTAGTGAAGTGTACAAAGTTGTTTCAAGTGATTGTACTATATATGCCCTTAAAGTGATCAAGTTGAAATGGCGTGATTATGCAATAGCTTATGGCTTTTGTCAAGAGATTTGGTATTTGATTAAGCTAAAAGGAAAGAACAATATCATTCAACTTATTGATTATGAGGTAACAGATAAAGCTTTGCTACAACAAGCTATGGAAGGGTCCATAACTTCAAAGGATGAAAAGATTAAAAATGATGAATACATTTACATGGTACTTGAGTATGGAGAAGTTGATCTGGCTCACATGCTTGCTCAAAAGTGTACCAATAAGGATAGCGCAAGATGGAATATGGATGATAATTGGTTGAGATTTTATTGGCAGCAAATGCTGGAAGCAGTGAACACTATACACGAGGAGCGAATCGTGCACTCAGATCTGAAGCCCGCAAACTTTCTGCTGGTCAAAGGATCCCTAAAGCTCATTGATTTTGGCATAGCGAAGGCTCTGCTGAATGACACCACTAACATCCAGAGGGATTCGCAGGCTGGAACTCTGAACTACATGTCCCCGGAAGCATTCATGCTGACCGAGCAGGATCTCGTCGCCGGCGGCGGCACCGCCATCAGATGTGGCCGCCCGTCAGACATATGGTCTCTGGGCTGCATCCTCTACCAGATGGTCTATGGTCGGACGCCGTTCTCTCACCACAAGACATTCTGGGCGAAGTTCAAAGCCGTGACCGACGAGAGCCACGAGATCCCTTACGGCCCCGTCGCAAACCCGTGGCTGATCGATCTGATGAGGAGATGCCTCGCATGGGACCGTAGCAAGCGGTGGAGAATTCCGCAGCTCCTTCAGCACCCATTTCTCGTCCATCTTCCCGCACCGCCCGGCTTGCATTCCCCCGATAGGGCTCGCCTGCATCTGGACCAACCCGAGGTCTTTGCTCTCTACTCCAGGATCTTGTCTCACTGCTCAGAGCTCTCCTCTCTGTACTCTGAGCTCGACGATCTGCTTTCGAGGCTTGAGAAGGATCGAAACTTCGACGGTGGCTGCAGCTGCGAGAAGTAAGCCTCGTGTTCATCTTTGGCTGATCTTGCATGTGTAATATAATAATATGTATGGCTATTTTGGTTCTTCAACATCTGTTGCATTGTAAATTTTCTTGTGTTTAAAGTAGGATGATTGCATATTTACATAATGGCTCCCACTCTAATAATAGAATTATAGGGTAATTATGTGAGCAGTGGTAATGCGGATTGAATAATACCTCCACTGGTGTTATCTTAATATAATTAACGC

Network for GWHGAAEX002574

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.24	Pkinase	378	674	6.10E-52

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TTK

KEGG pathway

KO	Enzyme	pathway	mapID
K08866	TTK, MPS1	Cell cycle	map04110
K08866	TTK, MPS1	Cell cycle - yeast	map04111

Gene Ontology

GO term	Ontology	Name
GO:0006468	Biological Process	protein phosphorylation
GO:0005524	Molecular Function	ATP binding
GO:0004672	Molecular Function	protein kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.700
SRP064423	SRR2545915	Juvenile tuber	21.440
SRP108465	SRR5643513	five period of Gastrodia elata	26.550
	SRR5643514	five period of Gastrodia elata	33.480
	SRR5643515	five period of Gastrodia elata	28.410
	SRR5643524	five period of Gastrodia elata	28.940
	SRR5643525	five period of Gastrodia elata	19.730
	SRR5643528	five period of Gastrodia elata	15.200
	SRR5643658	five period of Gastrodia elata	20.210
	SRR5643659	five period of Gastrodia elata	25.340
	SRR5643660	five period of Gastrodia elata	26.270
	SRR5643661	five period of Gastrodia elata	27.720
	SRR5643662	five period of Gastrodia elata	23.300
	SRR5643663	five period of Gastrodia elata	27.120
	SRR5643664	five period of Gastrodia elata	25.210
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	21.690
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.340
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.130
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	22.140
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	16.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	21.670
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	20.610
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	19.490
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.920
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	24.540
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.010
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.010
SRP279888	Gastro	Gastrodia elata tuber	24.59
	Juven	Juvenile tuber	34.22
	Mother_Gastro	Mother tuber of Gastrodia elata	24.05
	Mother_Juven	Mother tuber of Juvenile	20.96