Detail information of GWHGAAEX002581/evm.TU.scaffold_121.43
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|295696487|ref|YP_003589725.1| | 2.00E-39 | S-layer protein [Kyrpidia tusciae DSM 2912] |
| KOG | KOG1426 | 6.00E-49 | FOG: RCC1 domain |
| nr | gi|695068072|ref|XP_009380966.1| | 0 | PREDICTED: ultraviolet-B receptor UVR8 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FN03|UVR8_ARATH | 2.00E-49 | Ultraviolet-B receptor UVR8 |
| trEMBL | tr|M0RLD1|M0RLD1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P25570_001} |
| TAIR | AT5G63860 | 6.00E-49 | Regulator of chromosome condensation (RCC1) family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 1257598 | 1310295 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002581
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00415.17 | RCC1 | 70 | 114 | 1.10E-10 |
| PF00415.17 | RCC1 | 117 | 166 | 1.30E-08 |
| PF00415.17 | RCC1 | 169 | 220 | 5.80E-12 |
| PF00415.17 | RCC1 | 223 | 281 | 1.10E-08 |
| PF00415.17 | RCC1 | 285 | 331 | 1.60E-07 |
| PF00415.17 | RCC1 | 334 | 384 | 1.10E-13 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 7.630 |
| SRR2545915 | Juvenile tuber | 7.290 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.140 |
| SRR5643514 | five period of Gastrodia elata | 9.790 | |
| SRR5643515 | five period of Gastrodia elata | 6.450 | |
| SRR5643524 | five period of Gastrodia elata | 8.900 | |
| SRR5643525 | five period of Gastrodia elata | 10.420 | |
| SRR5643528 | five period of Gastrodia elata | 7.400 | |
| SRR5643658 | five period of Gastrodia elata | 8.820 | |
| SRR5643659 | five period of Gastrodia elata | 7.090 | |
| SRR5643660 | five period of Gastrodia elata | 6.850 | |
| SRR5643661 | five period of Gastrodia elata | 6.040 | |
| SRR5643662 | five period of Gastrodia elata | 6.700 | |
| SRR5643663 | five period of Gastrodia elata | 7.070 | |
| SRR5643664 | five period of Gastrodia elata | 8.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 6.250 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 5.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 4.910 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 5.970 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.190 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.750 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 5.600 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 6.340 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 5.880 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 5.920 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 5.920 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.46 |
| Juven | Juvenile tuber | 5.22 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.12 | |
| Mother_Juven | Mother tuber of Juvenile | 6.30 |