Detail information of GWHGAAEX002586/evm.TU.scaffold_121.48
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|302878310|ref|YP_003846874.1| | 5.00E-26 | hypothetical protein Galf_1080 [Gallionella capsiferriformans ES-2] |
| KOG | KOG1124 | 0 | FOG: TPR repeat |
| nr | gi|720025265|ref|XP_010263890.1| | 0 | PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|O23052|Y1515_ARATH | 0 | Uncharacterized TPR repeat-containing protein At1g05150 |
| trEMBL | tr|B9GRG6|B9GRG6_POPTR | 0 | Uncharacterized protein {ECO:0000313|EMBL:EEE80004.1} |
| TAIR | AT1G05150 | 0 | Calcium-binding tetratricopeptide family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 1405645 | 1408596 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002586
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13432.5 | TPR_16 | 240 | 299 | 0.0011 |
| PF13432.5 | TPR_16 | 351 | 410 | 7.90E-08 |
| PF13432.5 | TPR_16 | 417 | 466 | 2.50E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
| GO:0005509 | Molecular Function | calcium ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.980 |
| SRR2545915 | Juvenile tuber | 6.980 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.540 |
| SRR5643514 | five period of Gastrodia elata | 13.730 | |
| SRR5643515 | five period of Gastrodia elata | 11.200 | |
| SRR5643524 | five period of Gastrodia elata | 11.510 | |
| SRR5643525 | five period of Gastrodia elata | 6.230 | |
| SRR5643528 | five period of Gastrodia elata | 4.540 | |
| SRR5643658 | five period of Gastrodia elata | 4.180 | |
| SRR5643659 | five period of Gastrodia elata | 7.170 | |
| SRR5643660 | five period of Gastrodia elata | 7.580 | |
| SRR5643661 | five period of Gastrodia elata | 9.200 | |
| SRR5643662 | five period of Gastrodia elata | 9.250 | |
| SRR5643663 | five period of Gastrodia elata | 5.520 | |
| SRR5643664 | five period of Gastrodia elata | 10.110 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.980 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.670 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 15.220 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 13.250 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 15.180 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 14.420 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 13.060 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.740 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.610 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.96 |
| Juven | Juvenile tuber | 21.32 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.34 | |
| Mother_Juven | Mother tuber of Juvenile | 11.49 |