Gene detail

Detail information of GWHGAAEX002587/evm.TU.scaffold_121.49

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|347757658\|ref\|YP_004865220.1\|	carboxyl transferase domain-containing protein [Micavibrio aeruginosavorus ARL-13]
KOG	KOG0540	3-Methylcrotonyl-CoA carboxylase, non-biotin containing subunit/Acetyl-CoA carboxylase carboxyl transferase, subunit beta
nr	gi\|672118051\|ref\|XP_008782224.1\|	PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9LDD8\|MCCB_ARATH	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial (Precursor)
trEMBL	tr\|M0S1U3\|M0S1U3_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P21350_001}
TAIR	AT4G34030	3-methylcrotonyl-CoA carboxylase

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	1418394	1453931	-

Transcript Sequence
>GWHTAAEX002587 GTACAATTTTTGGCCTTACAAATATAAAACTCAGATTGTCTTATTGCCTTTTGCCAGTAAGGGTAGAAGAGGGAGCGAAGATAATGCTTAGGCGATTCTCTGCGAAACGATCATGGGCGAGGGGGCTGCTATCATCCTTCTTTAAACCAGGAAATCAACTTGCCCTTTTCAGCGGAGCTGTGCTTCCAGACGGCGTTGACCGGAGCTCGGAAGCCTTCGCCCGCAATTCCGGTACTGCTGAAAGTCTCCTTTCCGAGCTCCGTTCACACATTCTAAAGGTTCTTGGTGGAGGTGGAACCGAGGCCGTGAGAAGGAATCGAAGCCGGAATAAGCTGCTTCCTCGGGAGAGGATTGATCGAGTTATCGATCCTGGGTCTTCTTTTCTGGAATTGTCACAGCTTGCAGGCTATGATCTTTATGAAGAACCATTGCCATCAGGTGGGATTATTACAGGAATTGGACCCGTGCATGGTCGTCTATGCATGTTCGTGGCTAATGACCCCACTGTGAAGGGTGGTACATACTATCCTATTACCGTTAAAAAACATTTGAGGGCTCAAGAAATTGCGGCCGAGTGCAAGTTGCCATGCATATATCTTGTTGATAGCGGTGGAGCTAATCTGCCAAGGCAAGCTGATGTTTTTCCAGATCGTGATAATTTTGGCAGAATATTTTACAATCAAGCTAAAATGTCTGCAAAGGGTATCCCTCAGATCGCACTAGTTTTAGGCTCGTGCACTGCTGGAGGTGCTTATATACCTGCTATGGCTGATGAAAGTGTTATAGTCAAAGGAAATGGAACCGTTTTTTTAGCTGGGCCTCCCCTTGTGAAGGCTGCTACAGGTGAAGAGGTCTCTGCTGAGGATCTGGGCGGTGCATCCATGCACTGCAAGATATCAGGAGTTTCGGACCACTTTGCACACGATGAGCTTCATGGCTTGACTATTGGAAGAAATATTTTGAAGAACTTGCATATGGCTGGGAAAGGGATCAGTACATCTGCTTTTGTTTCTTCCAGATACAAAGAACCCCTGTATGATACAGATGAGCTTCGAATGATTGCATCAACAGATTTAAAGCAATCATTTGATGTTAGATCCATAATTGCTCGTATTGCAGATGGTAGCGAGTTTGACGAATTCAAGAAGTTGTATGGCACTACACTTGTGACAGGATTTGCCAAAATCTATGGCCAGACAGTTGGAATCATAGGAAACAATGGAATATTATTTGCTGAATCTGCTTTGAAAGGATCCCACTTCATTGAGCTATGTGCACAGCGTAACATTCCTCTTATTTTTCTTCAGAATATAACAGGTTTCATGGTAGGATCCAAATCTGAGGCAGGTGGTGTTGCTAAAGCTGGAGCTAAAATGGTTATGGCTGTCTCTTGTTCTAATGTTCCGAAGATAACTATTATAGTTGGTGGAAGTTTTGGTGCTGGAAATTATGGAATGTGTGGACGTGCGTACAGTCCTGATTTCTTGTTTCTTTGGCCCACTGCCAAAATTTCTGTCATGGGAGGTGCTCAGGCTGCCGGCGTCCTAGCACAGATTGAAAGAAGCAGTAAGAAAAAGCAAGGAATCAAGTGGAGTGTAGAAGACGAGGAGAGTTTTAAAGCTGCAGTGGTGGAAGCATACGAAAGGGAAGGAAGCCCTTATTACTCGACCGCAAGGTTGTGGGATGACGGCATCATCGATCCAGCTGATACCAGAAGGGTTTTGGGTTTCTGCCTGTCTGCTGCTATTAAGCCTAATCCCGAGGGCACAAAGTTTGGTGTTTTCAGAATGTGATGGTATTTTCTTTGTTCCTTTAAGTTCAATACTACCTGATAACAATAAGACATTCTTATTTAATATTTTTCATCCTTCAAACCCACCAATGAGAATGAATTCATATATTTGATGAATTAATTATAATATATATATATATATATACACACACACACATGCACCTATATATAGGCCTTCCCAGTCAACCGCATGGGTGTGGAGGCAACCAAGATTGTCAGATCAAGAAGGATGCATATATTAGAATAAACATGTTCATGTTTATTTTTATTTTCAAAATAAGTACATCACTACATTATCATTATTTTACCAATTACATTATGTAATCCATGTCAAATGCTTATTCAAATTGCACATCCGTTCGTGTCGGATCTTCACAATCTTTAAGGTAATGCTTCAAGTC

Network for GWHGAAEX002587

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01039.21	Carboxyl_trans	78	556	1.60E-149

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01969	E6.4.1.4B	Metabolic pathways	map01100
K01969	E6.4.1.4B	Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0016874	Molecular Function	ligase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.540
SRP064423	SRR2545915	Juvenile tuber	29.690
SRP108465	SRR5643513	five period of Gastrodia elata	39.300
	SRR5643514	five period of Gastrodia elata	43.440
	SRR5643515	five period of Gastrodia elata	38.140
	SRR5643524	five period of Gastrodia elata	44.760
	SRR5643525	five period of Gastrodia elata	29.360
	SRR5643528	five period of Gastrodia elata	30.270
	SRR5643658	five period of Gastrodia elata	29.280
	SRR5643659	five period of Gastrodia elata	32.360
	SRR5643660	five period of Gastrodia elata	32.050
	SRR5643661	five period of Gastrodia elata	32.190
	SRR5643662	five period of Gastrodia elata	28.530
	SRR5643663	five period of Gastrodia elata	32.540
	SRR5643664	five period of Gastrodia elata	32.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	39.550
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.650
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	39.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	44.860
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	50.680
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	54.390
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	45.260
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	45.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	39.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	44.650
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.990
SRP279888	Gastro	Gastrodia elata tuber	35.08
	Juven	Juvenile tuber	47.56
	Mother_Gastro	Mother tuber of Gastrodia elata	40.84
	Mother_Juven	Mother tuber of Juvenile	49.17