Gene detail

Detail information of GWHGAAEX002588/evm.TU.scaffold_121.52

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743801632\|ref\|XP_010926400.1\|	1.24E-39	PREDICTED: uncharacterized protein LOC105048693 [Elaeis guineensis]
trEMBL	tr\|M0SAZ4\|M0SAZ4_MUSAM	3.00E-26	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P01760_001}
TAIR	AT5G42900	2.00E-11	cold regulated gene 27

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	1465608	1481027	+

Transcript Sequence
>GWHTAAEX002588 GGGAGATATTTTCTCCTGGAAAATATCTAGGAGCAGCAGCAGCTCGCCTGGGATATTTTCGGCCTTGCCACGCGTCTTCCGTTCGAATGGCCATGTGAAAAGTATTGCCACGCTGGACAGCCACCCACCTCCTTGGCCCCCCGTCTCCTCTATTCAAATCGATTTCTGCCTCCACAGAGGAGAGAAATCTATACAAAAATTTGGATTTTAGGACGTTCTGTGTTCTTCTGTCTTATTTTCCCTTCATTTCTGAGTACTTGTCTATATATATAGGGTTGATCCGCTCAGTTTTGTGTCTCTCAGTGCTGATTAATGGAGGGCCATGACTTGACACATTCGGATCAGTCTTTCCCAACGAATAATTTCGAGGGCAAAAACCCTAGAGCTGGTAATATTCAATCTCTACACAATGAATGGACAGATGAGAAGCACAATTCTTATCTAAGGTTCATAGAATCAGCATTTGTTGATCAGTTATATAAAAGAGAACATCTTTCAAGTAATTCAGTGGGCTTGTTGTTAAAAGCTCAAGAGAAGACAAACTCATCACAATCAAATCATCGTAAACAACAGTCTGGTCAGTTTATGGGTCTGCGCAAAGGCTGCTGGGAAAATTTTAAATTTGAGGGGGCGAAAAGCAGAGCTGTTCTGGAAAAAGAAACTCGCTGTCTTTTAGCAAACCCATGGGTTCAGCACTTCAAGCCACCTTTTATTAGTAAACATTCTCAGGCATCTGTTGACATAGATAATAATGAGCTTTTATGTCGATCAATTATCTTAAACCGTTCAGCAGAAGACAGAAGAACCAAAGCAAAGCAGCTACCAGTTTCTCTTCCCCTTGTGTCTCAAGACTATCTCAAAATCATAACAGAGGTTACCGATCAAAACTTTGTCGATACGGAGCATAAATTAATGGAAATGACGAGCAAAGCAACTCTCAAGAAGAGAATGAGGGAGCCCACTTGTTCTGAAATCGCTGACCAAATAGTTCCCTGCAGCTCATCTTCTCTCTCCAGTCTTAGGAGTGGATATTCCCAGAAAGAGAATGATGCAGAATTGAGCAGCTCCATCAGGCAGAGGAAGAACATTGCTAATCCTTCTTGCTGCAATCACATGGAGCCCAAGCGTCTTGATTTTAAGAATGATTGACCGATGATATGGAGACAAATTTCGGGTAGTAAAATCGGTTTCTTTCAGTTGAGAAAGGTGAAGATTTCATAAACGGCAGGCATATAACCGGAATCGATCCATTTCTTTGTGCTTTGTAACAAAGTAACAGCAGATATTCAAGTGTTGCAATACCAATGTTTTATTTATTTATTTCAGATTTGTTGGAAGGCTTTTGTATTGAATCTTATTAGATGCAGTTACAGTTTGTAAATTTGGTCCATGTTAAACTTGGGCATGAATTGCATACAGTTGCTTGTTATGTTCCAATGGATGTATATAATTTTTTGTTCACAGTGAAGTAATTGTGCTGATAA

Network for GWHGAAEX002588

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	12.570
SRP064423	SRR2545915	Juvenile tuber	13.240
SRP108465	SRR5643513	five period of Gastrodia elata	2.830
	SRR5643514	five period of Gastrodia elata	3.690
	SRR5643515	five period of Gastrodia elata	4.910
	SRR5643524	five period of Gastrodia elata	2.990
	SRR5643525	five period of Gastrodia elata	8.490
	SRR5643528	five period of Gastrodia elata	5.830
	SRR5643658	five period of Gastrodia elata	9.490
	SRR5643659	five period of Gastrodia elata	7.990
	SRR5643660	five period of Gastrodia elata	8.250
	SRR5643661	five period of Gastrodia elata	10.770
	SRR5643662	five period of Gastrodia elata	12.500
	SRR5643663	five period of Gastrodia elata	6.960
	SRR5643664	five period of Gastrodia elata	13.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	5.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	4.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	5.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	5.970
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	8.800
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	12.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	9.210
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	7.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	4.410
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.830
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	3.520
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	3.520
SRP279888	Gastro	Gastrodia elata tuber	12.09
	Juven	Juvenile tuber	8.84
	Mother_Gastro	Mother tuber of Gastrodia elata	10.76
	Mother_Juven	Mother tuber of Juvenile	7.13