Detail information of GWHGAAEX002591/evm.TU.scaffold_121.56
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2928 | 3.00E-160 | Origin recognition complex, subunit 2 |
| nr | gi|672170384|ref|XP_008805251.1| | 9.67E-180 | PREDICTED: origin recognition complex subunit 2 isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q10QS7|ORC2_ORYSJ | 1.00E-168 | Origin of replication complex subunit 2 {ECO:0000303|PubMed:15939553} |
| trEMBL | tr|A0A067KTL3|A0A067KTL3_JATCU | 1.00E-176 | Uncharacterized protein {ECO:0000313|EMBL:KDP35610.1} |
| TAIR | AT2G37560 | 3.00E-160 | origin recognition complex second largest subunit 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 1549095 | 1569304 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002591
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04084.13 | ORC2 | 34 | 352 | 7.90E-95 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02604 | ORC2 | Cell cycle | map04110 |
| Cell cycle - yeast | map04111 | ||
| Meiosis - yeast | map04113 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006260 | Biological Process | DNA replication |
| GO:0000808 | Cellular Component | origin recognition complex |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 48.850 |
| SRR2545915 | Juvenile tuber | 44.960 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.920 |
| SRR5643514 | five period of Gastrodia elata | 33.270 | |
| SRR5643515 | five period of Gastrodia elata | 31.930 | |
| SRR5643524 | five period of Gastrodia elata | 37.400 | |
| SRR5643525 | five period of Gastrodia elata | 39.770 | |
| SRR5643528 | five period of Gastrodia elata | 51.580 | |
| SRR5643658 | five period of Gastrodia elata | 37.320 | |
| SRR5643659 | five period of Gastrodia elata | 42.250 | |
| SRR5643660 | five period of Gastrodia elata | 40.700 | |
| SRR5643661 | five period of Gastrodia elata | 38.730 | |
| SRR5643662 | five period of Gastrodia elata | 37.560 | |
| SRR5643663 | five period of Gastrodia elata | 34.590 | |
| SRR5643664 | five period of Gastrodia elata | 32.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 35.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.370 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.360 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.860 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 34.360 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 41.270 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 37.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.240 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.950 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 37.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 37.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 31.64 |
| Juven | Juvenile tuber | 34.17 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 35.49 | |
| Mother_Juven | Mother tuber of Juvenile | 33.92 |