Detail information of GWHGAAEX002594/evm.TU.scaffold_121.59
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 4.00E-89 | FOG: PPR repeat |
| nr | gi|743801546|ref|XP_010926377.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Elaeis guineensis] |
| Swissprot | tr|Q9SN39|PP320_ARATH | 1.00E-89 | Pentatricopeptide repeat-containing protein DOT4, chloroplastic {ECO:0000305} (Precursor) |
| trEMBL | tr|A0A061DGC6|A0A061DGC6_THECC | 9.00E-170 | Pentatricopeptide repeat-containing protein, putative {ECO:0000313|EMBL:EOX91375.1} |
| TAIR | AT4G18750 | 4.00E-89 | Pentatricopeptide repeat (PPR) superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 1575747 | 1577663 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002594
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 92 | 120 | 0.37 |
| PF12854.6 | PPR_1 | 219 | 250 | 1.40E-09 |
| PF01535.19 | PPR | 257 | 283 | 1.10E-05 |
| PF01535.19 | PPR | 365 | 385 | 0.71 |
| PF01535.19 | PPR | 428 | 449 | 0.021 |
| PF13041.5 | PPR_2 | 457 | 503 | 1.20E-09 |
| PF01535.19 | PPR | 532 | 555 | 0.02 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 3.450 |
| SRR2545915 | Juvenile tuber | 2.300 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 38.510 |
| SRR5643514 | five period of Gastrodia elata | 36.170 | |
| SRR5643515 | five period of Gastrodia elata | 52.090 | |
| SRR5643524 | five period of Gastrodia elata | 39.080 | |
| SRR5643525 | five period of Gastrodia elata | 26.810 | |
| SRR5643528 | five period of Gastrodia elata | 20.460 | |
| SRR5643658 | five period of Gastrodia elata | 27.230 | |
| SRR5643659 | five period of Gastrodia elata | 17.900 | |
| SRR5643660 | five period of Gastrodia elata | 13.140 | |
| SRR5643661 | five period of Gastrodia elata | 16.720 | |
| SRR5643662 | five period of Gastrodia elata | 52.330 | |
| SRR5643663 | five period of Gastrodia elata | 47.500 | |
| SRR5643664 | five period of Gastrodia elata | 99.540 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 52.280 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.870 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.130 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.100 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 41.330 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 44.800 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 99.850 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 56.290 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 22.900 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 63.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 29.290 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 29.290 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 64.16 |
| Juven | Juvenile tuber | 27.04 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 212.29 | |
| Mother_Juven | Mother tuber of Juvenile | 90.76 |