Gene detail

Detail information of GWHGAAEX002601/evm.TU.scaffold_121.68

Functional Annotation

Database	Orthologs	Annotation
nr	gi\|743859257\|ref\|XP_010942659.1\|	PREDICTED: uncharacterized protein LOC105060582 isoform X2 [Elaeis guineensis]
trEMBL	tr\|M0SCE2\|M0SCE2_MUSAM	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr3P06750_001}
TAIR	AT4G24610	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	1793682	1819822	+

Transcript Sequence
>GWHTAAEX002601 GAGCTCCCCGTTCCCACCGCCTTCCACCAACGTTCGACCGTTTTCCTTCCATTAGATTCCGTCTGCCCCCCGTTCTTTTTCCAACGGCACATTACGTTAAAAATAGTGAAGAACAGCATTTCTAATTTTATCACTCCCTTTCTCTCTCCTCCCACCCCACATTCTCCCCCGTTTTCTCCAAACCTTCCATCAGCAAAATCCCAAGGTCCATAGGATTAGGGCACAATTTCACTGGCGCAATACATTTCTAACCGTGCGGCTCTGCTTCACCCTTAGCTCTTATTATCTACCGGTCATTATGGGCACTTCACTCTCGAGGTCGCTTTGGTAGTTCTCGCTGAGTGTTTTCTGCTTGCCTGAGCAAGGGATCTCATTTTCCCTTTATTCGTTTTCCGAATCACAGAAAGCGATCTGTTTGATGCTGCATTGATATTTTTTCGGGTCGCAGATTTTTTTGTTTAGGGTTTCTTTTCATGGTCGGAACTTGGAATTCCAAACGGGCATGATGTTTACCGAAGGACTCGAACCCATCGCACTACAATGGGTCCGTGAGCAGAGGACAGATCCCCTCAGTGGTCTCCGAAACTGTGGCCGGGGGCTTGGAATTCCGCCGACGGAAAAATTTCGCAGCGGCCATCTTCCACGCACTGCGGTACCTCTATCTAGAACAATGCCGATAGATGATTACAGCGATTTAGGGTCGGATATGGACGTTTCGTCGGATACCGAAGAAGACGTATACGGTGGAAAGTATTCACTGGAGTCTTCTCCACCTCAAAATGGTGTTTCCCAAGGGAGGATTCCTAACGGAAGCACCGGAGTTACTCGGCAGCATCCTTACTATAGTGATGGTTATTCAGACTTCAGCTCATCTGTAGAGGCTGTGAGGCAACCGGCTAGGCAGCAGTGGAAGCAGGGGAGCATAAGTGGCTATACAGAGGAGGAAGAAGAGGGTAGTTCCGGCTTTAGTGGGGTGATTGGAAGAGGGGATTCAACCAGCGTCAGTGAGATAGCAAAAGGAAGGTATACTGATGAGAGCTACTCAAGCAAAGATCACTATCGAAACAATACTGCAGTTTCTGCCACCAAGGGGCGCCCTGTTGATATCCCGAGTGCTCCCCCGTTTCGCAATCCTCATGATGAAATCAATCAACCTGCTGATTGTATAGCCAGTTCGATTGCATGTGATAGTCCCTGTACAGCAGGTTTTAATGATTATTCTGGTAAGAATGGAATTAGTTCACGTGCTAATTCTGGAAGCAAAAAAATCAACCATAATACCAGCTCCAATTCAGTAGGTATTGAGACTTCAGCACCTTCCAAGTTGTTGCCAATGAAAGTCCCCACTTTTCATGCGTGTGGACAAGGTCCTTGGCATTCTGTAGTTTCATATGATGCTTGTGTACGCCTATGTCTTCATTCGTGGGCACGAGGCTGCATGGAAGCTCCTATTTTCCTTGAAAATGAGTGTGCCCTGTTGCGAAATGCATTTGGTTTGCAACATATATTGTTACAATCAGAGGAGGAACTTCTGGAAAAACGTTCTTCAGAACTTCTTGATAGCGCAGCAGTAAAACCTAAGAAAATAATTGGAAAAATTAAGGTTCAAGCGCGTAAGGTCAGAATGACACTGGACACTTCTGGATGCAATTATATGTCGCTGAGGAGCCCAACAATGAAACTGGAGTCATTCCGTTATCGTATATCAAACTTCCAGTCAACCCTGTCATCAGGGTGGAACTCATTTCGAAGAGTTAGAGTTTTTCCTCGTTTGCCATCTAACAGTTCTTTTTCCAAGCAAAGTCTGGCATATATGCAAGCTAGCGCTCAATACATCAAGCAGGTTTCTATGCTTCTCAAAACTGCTGTGTGTTCTCTCCAAAGTGCGCCTGCCTATGAAGCTGCATTAGAGTCATATACTTGTCTTTTGAGACTGAAAAGCTTAGCTGAAGATGACAGGGTTAGAATGCAAGTTGGTTCTGGCGAAGCACATTTTTTCTTTCCTGATAGCATGGGAGATGATCTAATTGTCGAAGTTCATGATTTTAGTGGAAAGAGTATTGGCCGGGCTGTTGTTCAACTGGCAATCATTGCAGAGGATGCGAGCAACAAAGTTCGCTGGTGGTCTATTTATAAAGAACCGGAACATGAACTTGTGGGTCGCTTGCAACTTTACTTATATTACTCGACCACTACAGATGAAGGAAGTTCTTTGAAGTGTGGATCTGTGGCAGAAACTGTAGCATATGATATTGCCTTGGAAGTTGCAATGAAAGCTCAACATTTTCAGCAACGCAATCTTCTTTTGCATGGACCATGGAAATGGTTACTAACAGAATTTGCTTCCTATTACGGTGTTTCAGATGCGTACACGAGACTAAGATATCTGTCATACATCATGGATGTTGCGACTCCTACTGCAGATTGTCTAACCTTAGTGCATGATCTTCTAGCACCTGTGATTTTAAAGAATGGCGGTGCAAAATCTTTGAGCCATCAAGAGAATCGTATTCTTGGAGAAATTGAGGAGCAGATTGAAGTAATTTTAGCTATGGTTTTTGAAAATTACAAGTCACTGGAGGAATCATCACCTTCAGGATTAGTGGAAGTTTTCCGGCCATCTACTGGTATACCAGCTGCAGCTTTGGTTCCTGCCGTAAATCTATACAAGCTTTTGCTTGATATTTTGTCACCAGAGGCTCAATTAAAATTATGCAGTTATTTTCAGGTTGCTTCTAAGAAGAGGTCTAGGAGGCATCTATCTGAAACTGATGAATTTGTTGGAAACAGTGCTGGGGGAGGGTCAACAGGCAGCAGTGGGGGAACTACTATGGAATCTCTCACTGTTGCTACTGCTTATGAAAAGATGAAAAATCTTTGCTTAAGCATAAGGAATGAAATATTTACAGATATAGAGATTCATGACAAACATGTGCTTCCTAGTTTTGTAGACCTTAGCAATATATCAGCATCCATTTACAGTGTGGAGCTTTGTAAAAGACTGCGGGAATTTCTTGTTGCATTTCCTCCAACTGGTCCGTCACCTCATGTGGCAGATCTTGTAGTTGCTACAGCAGATTTTCAAAAGGATCTTGCCAACTGGAATATCTGTCATGTTAAGGATGGTGTTGATGCAAAAGAACTTTTTCATCTCTATATTATATTTTGGATTCAAGATAAACGCCTACAATTGCTGGAGTCGTGCAAACTAGACAAAGTAAAGTGGTCTGGCGTTAGAACACAGCATATGACAACTCCATTTGTAGACGGCATGTATGACCTGCTGAGAGAAACTCTTAATGAGTATGAAGTTATCATATGTAGGTGGCCAGAATACACTGCAGTTCTTGAGAATGCAATTGCAGACGTTGAGAAAGCTGTGATTGAGGCTTTAGAGAGGCAGTATAGTGACGTTTTGGCTCCCTTGAAGGATGCTCTGACACCTAAGAAATTTGGCCTCAAATATGTACAGAAGCTTGCTACACGCAGCAATGCAGGCCCTTACATTGTCCCTGATGAGCTTGGAGTTCTCTTGAATAGCATGAAAAGGTTGCTTGATGTTTTGAGGCCGAAGGTAGAAATGCAGTTTAAGTCTTGGGCATCTTACACGCCTGATGGTGGACATACCGCTGTTGGAGAGCATCTCAGCGAAGTTGCAGTAACTCTTAGATCAAAGTTCAGAAACTACATGCAAGCAGTCGTAGAGAAGCTTGTGGAGAATAGTCGTGCACAAAGTGCAACAAAACTGAAGAAGATAATACAGGATTCTAAAGATGTTATGGTGGAATCTGACATCAGGAACAGAATGCAGCCTCTAAGGGATCAACTTGTGGAGACTATAAACCATCTTCACACTATTTTGGAGTCCCATGTTTTTGTATCATTATGCAGATGTTTCTGGGATAGGATGGGACAGGATGTTCTGAACTTCTTAGAGGATCGCAAGGAGAACAGGTCCTGGTACAAAAGCGCAAGAGTCACAGTTGCTATATTGGAGGACACATTTGGATCGCAGATGCAGCGGGTGCTTGGGAATGCGCTGCAGGAGAAAGATGTCGAGCCTCCAAGGTCAATCATGGAGGTCCGCTCCGTCCTTTGCAAAGATGCTTCTTCCCTCAATCACAACGATTCTAATTTCTATTACTAAAAGCTCATCATCATCGTCGTCATCGTCTGTTTAAAAGATTTGGATGCATGGATGGATGACCACCTGTTTGCTCACTGTGTACATCATCATCGCTATTTCATTCAATATAGTAGAGAGGTGTGCTCATGGTTCACACTGGGAGGTTTCCATCCAGATCTGCTCATGGTCCTGTTGTATGTATGTAGATAGGAGATGATTGATGCATGGATGGGTTGCTCCCCCCGGCTGCAAGTTTTGACTTGATGGAATTCTTCGGTTATGTTTGCATCAGCAAAAAAAGGTTGTGTTTTTGACTAGATTTAGGGGTCATATCATGTGGTTCAATCTGTGTCTAGACTCATATTTTTAGCGATCAATGGATGTTATATATACATGCATGTATATGTATACATACATTTGGTAGATGCAATGGTTTTTTTTACTAGGGGTGGGGGTGTAATTTTTATTAAATTAGTATGATGTTTTAATATTATATGGAAATATAATTTATTGCAGTAGGATGTGGACACGATTGTCATGTTATGGAGTATGGATGGTCTGCTATTTTTTTTTCTTGATGTGCTGTGTATGAATGTATTTATGAATCAT

Network for GWHGAAEX002601

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

>GWHPAAEX002601
MMFTEGLEPIALQWVREQRTDPLSGLRNCGRGLGIPPTEKFRSGHLPRTAVPLSRTMPIDDYSDLGSDMDVSSDTEEDVYGGKYSLESSPPQNGVSQGRIPNGSTGVTRQHPYYSDGYSDFSSSVEAVRQPARQQWKQGSISGYTEEEEEGSSGFSGVIGRGDSTSVSEIAKGRYTDESYSSKDHYRNNTAVSATKGRPVDIPSAPPFRNPHDEINQPADCIASSIACDSPCTAGFNDYSGKNGISSRANSGSKKINHNTSSNSVGIETSAPSKLLPMKVPTFHACGQGPWHSVVSYDACVRLCLHSWARGCMEAPIFLENECALLRNAFGLQHILLQSEEELLEKRSSELLDSAAVKPKKIIGKIKVQARKVRMTLDTSGCNYMSLRSPTMKLESFRYRISNFQSTLSSGWNSFRRVRVFPRLPSNSSFSKQSLAYMQASAQYIKQVSMLLKTAVCSLQSAPAYEAALESYTCLLRLKSLAEDDRVRMQVGSGEAHFFFPDSMGDDLIVEVHDFSGKSIGRAVVQLAIIAEDASNKVRWWSIYKEPEHELVGRLQLYLYYSTTTDEGSSLKCGSVAETVAYDIALEVAMKAQHFQQRNLLLHGPWKWLLTEFASYYGVSDAYTRLRYLSYIMDVATPTADCLTLVHDLLAPVILKNGGAKSLSHQENRILGEIEEQIEVILAMVFENYKSLEESSPSGLVEVFRPSTGIPAAALVPAVNLYKLLLDILSPEAQLKLCSYFQVASKKRSRRHLSETDEFVGNSAGGGSTGSSGGTTMESLTVATAYEKMKNLCLSIRNEIFTDIEIHDKHVLPSFVDLSNISASIYSVELCKRLREFLVAFPPTGPSPHVADLVVATADFQKDLANWNICHVKDGVDAKELFHLYIIFWIQDKRLQLLESCKLDKVKWSGVRTQHMTTPFVDGMYDLLRETLNEYEVIICRWPEYTAVLENAIADVEKAVIEALERQYSDVLAPLKDALTPKKFGLKYVQKLATRSNAGPYIVPDELGVLLNSMKRLLDVLRPKVEMQFKSWASYTPDGGHTAVGEHLSEVAVTLRSKFRNYMQAVVEKLVENSRAQSATKLKKIIQDSKDVMVESDIRNRMQPLRDQLVETINHLHTILESHVFVSLCRCFWDRMGQDVLNFLEDRKENRSWYKSARVTVAILEDTFGSQMQRVLGNALQEKDVEPPRSIMEVRSVLCKDASSLNHNDSNFYY

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	11.540
SRP064423	SRR2545915	Juvenile tuber	22.370
SRP108465	SRR5643513	five period of Gastrodia elata	10.880
	SRR5643514	five period of Gastrodia elata	7.440
	SRR5643515	five period of Gastrodia elata	12.390
	SRR5643524	five period of Gastrodia elata	9.310
	SRR5643525	five period of Gastrodia elata	4.850
	SRR5643528	five period of Gastrodia elata	3.840
	SRR5643658	five period of Gastrodia elata	3.650
	SRR5643659	five period of Gastrodia elata	9.100
	SRR5643660	five period of Gastrodia elata	9.550
	SRR5643661	five period of Gastrodia elata	10.080
	SRR5643662	five period of Gastrodia elata	7.940
	SRR5643663	five period of Gastrodia elata	7.570
	SRR5643664	five period of Gastrodia elata	4.600
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	8.930
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.790
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.330
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	8.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.380
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	4.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	8.470
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.610
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	13.530
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	8.230
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	8.230
SRP279888	Gastro	Gastrodia elata tuber	11.55
	Juven	Juvenile tuber	8.81
	Mother_Gastro	Mother tuber of Gastrodia elata	6.04
	Mother_Juven	Mother tuber of Juvenile	5.54