Detail information of GWHGAAEX002615/evm.TU.scaffold_121.85
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428306381|ref|YP_007143206.1| | 7.00E-67 | pyridoxamine 5'-phosphate oxidase [Crinalium epipsammum PCC 9333] |
| KOG | KOG2585 | 2.00E-128 | Uncharacterized conserved protein |
| nr | gi|672117975|ref|XP_008782184.1| | 0 | PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Phoenix dactylifera] |
| Swissprot | tr|Q9LTX3|PPOX1_ARATH | 0 | Probable NAD(P)HX epimerase (Precursor) |
| trEMBL | tr|M0SA73|M0SA73_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P22320_001} |
| TAIR | AT5G49970_1 | 2.00E-128 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 2075546 | 2116494 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002615
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03853.14 | YjeF_N | 113 | 285 | 8.70E-35 |
| PF01243.19 | Putative_PNPOx | 362 | 445 | 7.10E-24 |
| PF10590.8 | PNP_phzG_C | 502 | 546 | 9.40E-18 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K23998 | PPOX | Vitamin B6 metabolism | map00750 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008615 | Biological Process | pyridoxine biosynthetic process |
| GO:0048037 | Molecular Function | cofactor binding |
| GO:0010181 | Molecular Function | FMN binding |
| GO:0004733 | Molecular Function | pyridoxamine-phosphate oxidase activity |
| GO:0016638 | Molecular Function | oxidoreductase activity, acting on the CH-NH2 group of donors |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 39.740 |
| SRR2545915 | Juvenile tuber | 19.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 15.570 |
| SRR5643514 | five period of Gastrodia elata | 13.370 | |
| SRR5643515 | five period of Gastrodia elata | 15.520 | |
| SRR5643524 | five period of Gastrodia elata | 12.460 | |
| SRR5643525 | five period of Gastrodia elata | 10.180 | |
| SRR5643528 | five period of Gastrodia elata | 8.440 | |
| SRR5643658 | five period of Gastrodia elata | 11.080 | |
| SRR5643659 | five period of Gastrodia elata | 17.890 | |
| SRR5643660 | five period of Gastrodia elata | 18.910 | |
| SRR5643661 | five period of Gastrodia elata | 18.590 | |
| SRR5643662 | five period of Gastrodia elata | 17.300 | |
| SRR5643663 | five period of Gastrodia elata | 17.620 | |
| SRR5643664 | five period of Gastrodia elata | 17.250 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 25.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 19.370 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 36.090 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.170 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 39.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 32.890 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.020 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 15.510 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.980 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.980 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 18.31 |
| Juven | Juvenile tuber | 23.33 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.40 | |
| Mother_Juven | Mother tuber of Juvenile | 11.16 |