Detail information of GWHGAAEX002616/evm.TU.scaffold_121.87
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-111 | FOG: PPR repeat |
| nr | gi|743806216|ref|XP_010927623.1| | 3.17E-166 | PREDICTED: pentatricopeptide repeat-containing protein At5g66500, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q9FJY9|PP448_ARATH | 5.00E-112 | Pentatricopeptide repeat-containing protein At5g66500, mitochondrial (Precursor) |
| trEMBL | tr|F6HQW0|F6HQW0_VITVI | 5.00E-133 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB57008.1} |
| TAIR | AT5G66500 | 2.00E-111 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 2133186 | 2135632 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002616
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module13 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 79 | 105 | 0.00025 |
| PF01535.19 | PPR | 276 | 295 | 1.2 |
| PF01535.19 | PPR | 305 | 333 | 2.70E-06 |
| PF01535.19 | PPR | 342 | 369 | 0.0012 |
| PF01535.19 | PPR | 379 | 400 | 0.011 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.400 |
| SRR2545915 | Juvenile tuber | 6.160 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.150 |
| SRR5643514 | five period of Gastrodia elata | 5.660 | |
| SRR5643515 | five period of Gastrodia elata | 20.490 | |
| SRR5643524 | five period of Gastrodia elata | 2.360 | |
| SRR5643525 | five period of Gastrodia elata | 16.400 | |
| SRR5643528 | five period of Gastrodia elata | 13.360 | |
| SRR5643658 | five period of Gastrodia elata | 4.820 | |
| SRR5643659 | five period of Gastrodia elata | 38.040 | |
| SRR5643660 | five period of Gastrodia elata | 9.780 | |
| SRR5643661 | five period of Gastrodia elata | 19.980 | |
| SRR5643662 | five period of Gastrodia elata | 47.930 | |
| SRR5643663 | five period of Gastrodia elata | 23.930 | |
| SRR5643664 | five period of Gastrodia elata | 174.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 34.510 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 19.050 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 22.430 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.050 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 41.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 29.030 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.530 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.730 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.510 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.510 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.42 |
| Juven | Juvenile tuber | 0.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 2.07 | |
| Mother_Juven | Mother tuber of Juvenile | 0.19 |