Detail information of GWHGAAEX002617/evm.TU.scaffold_121.89


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428204860|ref|YP_007100486.1|8.00E-08WD-40 repeat-containing protein [Chroococcidiopsis thermalis PCC 7203]
KOGKOG03061.00E-22WD40-repeat-containing subunit of the 18S rRNA processing complex
nrgi|695070240|ref|XP_009382138.1|9.53E-33PREDICTED: WD repeat-containing protein 3 [Musa acuminata subsp. malaccensis]
trEMBLtr|M0RNN2|M0RNN2_MUSAM4.00E-33Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P02020_001}
TAIRAT3G215401.00E-22transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012521428392144094+
Transcript Sequence

Network for GWHGAAEX002617

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K14556DIP2, UTP12, WDR3 Ribosome biogenesis in eukaryotes map03008

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.600
SRR2545915Juvenile tuber2.670
SRP108465SRR5643513five period of Gastrodia elata2.610
SRR5643514five period of Gastrodia elata4.360
SRR5643515five period of Gastrodia elata3.300
SRR5643524five period of Gastrodia elata2.990
SRR5643525five period of Gastrodia elata6.340
SRR5643528five period of Gastrodia elata6.200
SRR5643658five period of Gastrodia elata5.010
SRR5643659five period of Gastrodia elata11.410
SRR5643660five period of Gastrodia elata10.160
SRR5643661five period of Gastrodia elata10.440
SRR5643662five period of Gastrodia elata11.040
SRR5643663five period of Gastrodia elata9.630
SRR5643664five period of Gastrodia elata10.480
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_110.830
SRR6049655Rhizomagastrodiae_C368-T10_good_13.270
SRR6049656Rhizomagastrodiae_C368-T07_good_17.270
SRR6049657Rhizomagastrodiae_C368-T07_good_110.600
SRR6049658Rhizomagastrodiae_C368-T04_good_118.820
SRR6049659Rhizomagastrodiae_C368-T04_good_120.660
SRR6049660Rhizomagastrodiae_C368-T01_good_115.490
SRR6049661Rhizomagastrodiae_C368-T04_good_19.040
SRR6049662Rhizomagastrodiae_C368-T01_good_14.880
SRR6049663Rhizomagastrodiae_C368-T01_good_19.620
SRR6049664Rhizomagastrodiae_C368-T10_good_14.340
SRR6049665Rhizomagastrodiae_C368-T10_good_14.340
SRP279888GastroGastrodia elata tuber 12.73
JuvenJuvenile tuber1.42
Mother_GastroMother tuber of Gastrodia elata 5.82
Mother_JuvenMother tuber of Juvenile 1.42