Gene detail

Detail information of GWHGAAEX002621/evm.TU.scaffold_121.92

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG0800	6.00E-31	FOG: Predicted E3 ubiquitin ligase
nr	gi\|672196950\|ref\|XP_008776946.1\|	9.50E-54	PREDICTED: RING-H2 finger protein ATL52 [Phoenix dactylifera]
Swissprot	tr\|Q8LFY8\|ATL54_ARATH	2.00E-31	RING-H2 finger protein ATL54
trEMBL	tr\|A5BMY3\|A5BMY3_VITVI	3.00E-42	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN61577.1}
TAIR	AT1G72220	6.00E-31	RING/U-box superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	2229796	2244412	-

Transcript Sequence
>GWHTAAEX002621 ATGGCTTCGCGCCGCATCCATCTCTACGCCAACGGCAACAACACCTCCGACGACAACTTCAACTTCGACGGCAACATCACTCTGGACTGCATCTCCAACTGCGTCGGCATCTGCGTCTACGGTGTCTGCTTCCCTTCCCCTCCGTCATCCCCGGCTTCTCTGCCCAACGATAACTCCACATACGTCACCCTTCCGATCAACGTTCATCGCAGCGATCGTCTCACCCCAACCCTGATAATCACCGCCGTCTCCGCCGTCGCCGGCTGCTTCGCCCTCCTCCTCGCCCTCTATGCCTGCTTTCGCCTCCGTCGCCGTCGTCGTCGTCCTCCGGCAAGGGAAGATGCGGCCGATGCTCTGAACCGTGACGAGGTCGACAGCGATTTCGTTCCCGGCGGCGAGATCGAGCACCACATCTGGTACATCCGAACCCAGGGGCTTGACGACAGCACCATCGCCTCCATCACGTCATGGATCTATAGATCCAGTGACGGCCTCATCGATGGCAGGGATTGCTCCGTTTGCTTAGGTGAGTTTTACGAAGGAGATCTTGTTCGGCTGCTCCCAAAGTGCAGCCACGCGTTTCATCTTTCGTGCATAGATCGGTGGCTCAGATCCCACATCAACTGCCCTCTCTGCCGCGCTCCAATTGTTCCTCCGGGGGCGGCTGCTGCTGCGCCCGCCCCATCCCCTGCTTCTCCTGCAACCGCCTTTATCACGGACCTGGTCGAGCCCATAATCGGCTCTCCTGTTCCAGTAGAATCCACGCAGGTGGAGGCGTTTCCATCGGCTAGTATTGGTGATGAGATTGAGATCGGAATCATGATCGATCGGAGTCAAGAGGAGACTTCTTCTCGGTCGCCAGTTTTGTTAGAGCTGCTGCCTAATTCGTCGGAGGACGAAGATAACTTGCAGCCGATTCGGCGATCCGTTTCAATGGATGCTTTGGGTGTGTTGGGCAGGGCAGAAGAGGAGGAAATGCCCTCTGCAAATGGAGATAAACCAAGAGGCTTCTATTTGAAAAGGAACTTGAGAAGAAAATTTCATTCAAAGATTGGAAGACCTCTTTCCAGCCAAAGCGCGAGGTGGTTCTATCCCAGGACTGTTGGGTACGAGGACATACAACGCACACAGGCGCAAGTGATGCAAAAGCGTGCAGGATGGCTCACATGCTTGGACAGGAGTGATCACGCACTCAGACATGTATCGTCACGCATTTGGGCGAGCGTTTGTGCTGTGTTAATGAACTGGGTTTTCATGAATGAACTGATGGATGACTTGCACTTACTTGAGGCTATAAATGAAGCTAATCTTATTAATCTCAAAAAGTACTTTGATCTTTTCCATCAATTTTCAGGTAATGTTTCTATTGATGAAGAAACTACATTTCCATCGGTGGTAGACCCTCCCGTGATTTTGGATGGCTTTGTTGCAGCTGCAGATGCTAGAGTAGAAGGTGTCAGTTTGGAAATAATTGGAGTTATTGATTTGCTCGGGCTTGCAGAGGATGCTTCTTGCCAAGCGTTGGCAGGAAAATCAAATGGTGTTATGATTAGTCAGCCTATAGGCCCTTTCGATTCCGCAAAGAACTCGGACGTGGATTCTTTCGAGAAATCTAAGGATAACTTTCTGGACTCGGAGCTTTTACATAATTTCCTTGTTAGGCATAAAGGACCGCCCCCTCCTCGAGGCAGGAGGTTAGCCTCGGAAACAGGAGGATTAAGTGAAAACAAAAATGTTGCAATAGTGGCAGATTCTGGGTTTCCATCCATATTCTACTTTTTGTGA

Network for GWHGAAEX002621

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13639.5	zf-RING_2	170	213	2.40E-13

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	15.600
SRP064423	SRR2545915	Juvenile tuber	13.100
SRP108465	SRR5643513	five period of Gastrodia elata	38.450
	SRR5643514	five period of Gastrodia elata	36.760
	SRR5643515	five period of Gastrodia elata	91.200
	SRR5643524	five period of Gastrodia elata	47.010
	SRR5643525	five period of Gastrodia elata	89.010
	SRR5643528	five period of Gastrodia elata	162.860
	SRR5643658	five period of Gastrodia elata	86.670
	SRR5643659	five period of Gastrodia elata	44.600
	SRR5643660	five period of Gastrodia elata	43.020
	SRR5643661	five period of Gastrodia elata	42.850
	SRR5643662	five period of Gastrodia elata	58.760
	SRR5643663	five period of Gastrodia elata	47.600
	SRR5643664	five period of Gastrodia elata	52.050
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	37.570
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.300
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	28.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	40.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	42.100
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	52.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	40.370
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	40.550
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	22.180
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	35.760
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.560
SRP279888	Gastro	Gastrodia elata tuber	26.25
	Juven	Juvenile tuber	22.65
	Mother_Gastro	Mother tuber of Gastrodia elata	203.90
	Mother_Juven	Mother tuber of Juvenile	147.87