Detail information of GWHGAAEX002630/evm.TU.scaffold_121.102
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530779864|ref|YP_008431664.1| | 1.00E-23 | hypothetical protein N186_01315 [Thermofilum sp. 1910b] |
| KOG | KOG0087 | 3.00E-119 | GTPase Rab11/YPT3, small G protein superfamily |
| nr | gi|672117939|ref|XP_008782165.1| | 9.04E-131 | PREDICTED: ras-related protein Rab11D-like [Phoenix dactylifera] |
| Swissprot | tr|Q40522|RB11D_TOBAC | 2.00E-125 | Ras-related protein Rab11D |
| trEMBL | tr|B6TG03|B6TG03_MAIZE | 7.00E-128 | Uncharacterized protein {ECO:0000313|EMBL:ACN35232.1, ECO:0000313|EnsemblPlants:GRMZM2G122805_P01} |
| TAIR | AT5G65270 | 3.00E-119 | RAB GTPase homolog A4A |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 2331762 | 2339975 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002630
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00071.21 | Ras | 13 | 172 | 7.40E-62 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K07904 | RAB11A | Endocytosis | map04144 |
| Pancreatic secretion | map04972 | ||
| Vasopressin-regulated water reabsorption | map04962 | ||
| Endocrine and other factor-regulated calcium reabsorption | map04961 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0003924 | Molecular Function | GTPase activity |
| GO:0005525 | Molecular Function | GTP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 16.580 |
| SRR2545915 | Juvenile tuber | 23.840 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 87.350 |
| SRR5643514 | five period of Gastrodia elata | 94.330 | |
| SRR5643515 | five period of Gastrodia elata | 87.120 | |
| SRR5643524 | five period of Gastrodia elata | 77.430 | |
| SRR5643525 | five period of Gastrodia elata | 72.210 | |
| SRR5643528 | five period of Gastrodia elata | 56.650 | |
| SRR5643658 | five period of Gastrodia elata | 71.400 | |
| SRR5643659 | five period of Gastrodia elata | 151.050 | |
| SRR5643660 | five period of Gastrodia elata | 136.240 | |
| SRR5643661 | five period of Gastrodia elata | 143.700 | |
| SRR5643662 | five period of Gastrodia elata | 97.940 | |
| SRR5643663 | five period of Gastrodia elata | 121.810 | |
| SRR5643664 | five period of Gastrodia elata | 82.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 101.910 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 62.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 117.920 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 92.910 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 82.390 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 83.260 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 112.740 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 92.400 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 148.320 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 134.040 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 119.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 119.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 91.41 |
| Juven | Juvenile tuber | 87.89 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 34.79 | |
| Mother_Juven | Mother tuber of Juvenile | 35.21 |