Gene detail

Detail information of GWHGAAEX002635/evm.TU.scaffold_121.108

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|189218303\|ref\|YP_001938945.1\|	6.00E-14	RNA-binding protein (RRM domain) [Methylacidiphilum infernorum V4]
KOG	KOG4207	1.00E-63	Predicted splicing factor, SR protein superfamily
nr	gi\|255581357\|ref\|XP_002531488.1\|	1.50E-85	serine/arginine rich splicing factor, putative [Ricinus communis]
Swissprot	tr\|Q9FMG4\|SC35_ARATH	4.00E-64	Serine/arginine-rich splicing factor SC35
trEMBL	tr\|B9SZR9\|B9SZR9_RICCO	6.00E-86	Serine/arginine rich splicing factor, putative {ECO:0000313\|EMBL:EEF30895.1}
TAIR	AT5G64200	1.00E-63	ortholog of human splicing factor SC35

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	2518343	2523386	-

Transcript Sequence
>GWHTAAEX002635 AAAAAAGAAGATAAATATTAATATTATATTTATCTAGCATAAATTTAGTAGTTGTTAATGTGAATTCAAGAAATTATGTGAATGATGTTATAATTTTGTTATCAAGATCTTTGAAATAATATTAATGAACGTTGTTAATGAAAGCAATTAAATTCAAAGGATGTAATTTTAATTTAGTTGTGCGAACAAAAGATTTATAAGAGTGGTAATCGCGCCGGTTCTCCAAAAGCTACCCTTCCCTTCATAGCAAGGTCATGTGAGAAAAAATACTGCACAACTACACTTGGGCATCAGTGCCTGGGCCATTGTGTGGGTTGGGTTCAGGTCAATCAGTGAAAATAAGTATTTATTGTAAGAGGAGTATTGGGCTGGACCTGGCCTGAACTCTTTTTGGTCCGGCCGGGTCGGTTCACCCACAAGTTAATATATGATCATATTTTTTATTTAAAAAAATTGAAGATAATTGGTATTATAATATAAACTTGAGCTGTAATTATGCAATTATTAAAATATAGTTGTTCAGAATGTAAAAATTACTTTATCGCAGGATATCAAAAGCCCAATAGATATAAGCACTACCCGGTGACGCTATATAAACCCTAAACTGCTGCTTATTATATTATTATCAATCAAGTATTTTCTTGGTTCACTATCGCCGTTCTAATTTCCCGAAACCCTAACCCTATATCCTGATTTCTCTCTTTGCCTGTGAGATATATCGACAACAGATGTCGCACTTCGGGAGGTCTGGTCCGCCGGACATCAAGGATACTTACTCTCTTCTTGTCCTGAATATTACCTTCAGAACCACAGCGGACGATCTATTTCCTCTCTTTGATAAATACGGGAAGGTTGTTGATATCTTCATTCCGAGAGATCGAAGGACTGGGGAGTCCCGAGGCTTTGCGTTTGTGAGATACAAGTACGCAGATGAGGCTCAGAAAGCTGTTGAAAAACTAGATGGAAAGAATGTGGATGGACGAGAGATCATGGTCCAGTTTGCCAAATATGGACCGAACGCTGAAAGAATCCACAAAGGAAGAATTGTTGAAGCTGTGCCGAGGTCAAAGGGAAGGTCTAGAAGCCACAGTCCCAGGCCTAGATATAAAGATGATTATTACCGTGATAGAGATCACCATCGAGATAGAGATTATTATAGAAGGAGAAGCCGCAGTCGAAGCAGGGACAGGTATGAGCGTGATAAATATATTGAGAGGGAGAGAGATTACCGTCGGCGAAGCCGCAGTCACAGCATGAGCCCTGATTACCGCAGAGGTAGAGGCAGAGATTATGATGATGAACGGGAGAATAGCAGAAGCCGTTCTATTGATAGTGCATCGGATCGTCAAAGTCTTAGCCCAAGGAGAAGCATGTCTCCGAGAAAGCTTTCTCCATCTGTTAGTCGGAGTCCAGCCTCCCGTGATGGAAGCCCCATCAAGCACAGCAGTGCCAGACGTTCACCCTCTCGAAGCCCTTCTCCAAGAGGACGCCGTGGTGATTTTCATAGTGCATCCCCTCACAATTCTGATGAGGATTGATTTCTGTTCGTTTCAGCGCTAGAGTAGATGAAAACTTGTCCCTCCTTGCTTGTACGCATAATCCTGAATGTTCGATGATAACTATTCTGAACTTCTTTTCAAGGTTACATGTTTGTTTTCTAGTTGCTGCTATCTATTACTTTGTTTTGGACACATTTTCTCTATCCGGTTTGCATGTGTTTTGGCTGCAGTTGTCAATGCCTGCATTTTGTTAAAAAGTCTGTTAAAGATTGTGATGTGACTTGTTTGCAACTTCACTGCTCTATATTTTAGCTTTTTGCTATTTCCCGTTCATGTGAGATATGCTGACTTGTGGTAGATCCTACAATTTCTAGCTTTGCTCGAGAAAATGGTAATTGTAGCTGATTAGCGGCTGATAGTGAGGTTGGTTGATGCAAATGGGTGTTCTTGAAGTTGCTGTTAGTTCGTGTTGATGATATCATTGATGCTGATGATGATGATATATCGATGGGCTGTAGCTGTGTTGTAAGAGATGAGGGGGCAAAGCTGTTGATATCCCATGCAGCTGCTGATTCTGTGATGTTGCGTTGCTGATTTAGCTGATGAATCCGATGTATTTCCTTTATCTCAATGGATCTGCCCCCTTTCATTGGTTGGTATGGTGGTTTAATTTCTTACTATTATAATCGAGTTGAATTATAAAATATAACAGATTGAATTTTTGTAATATTTTTATGTAGACGCCAATTATATATGTTTATTTACATTTATACAACTCCATGCCAATGAATCTGAATACTTGATCAAGTTTACTTGTTTTGGTTTAGCATGTTGTCTAGAGCCTCACTTGATGCTTTGAATGGGAATTGATTATTGTTTTTTTCTCCCTTTGTTTTTGTTTGTGTAGTATTTGTATAATGTTTGGATACTGTGCCCTTTTAGGTTTGCAGTAATGCAATAATTCTGAACATACCATTTTAGTCTTTGAACGCAAAGGCTCAGTCTCACTAAATAGGGGGCGGCTGATCACATAGCGGCTGCCTACGGCGCTTTACATTCTCGAATGGTTGGTTGGTTATCTTTTGTGATATGAATGAACTCATTTATCATATGAGAGCTCTCCTCTGTATATAGTT

Network for GWHGAAEX002635

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.21	RRM_1	18	87	8.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12891	SFRS2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	32.240
SRP064423	SRR2545915	Juvenile tuber	39.320
SRP108465	SRR5643513	five period of Gastrodia elata	30.760
	SRR5643514	five period of Gastrodia elata	29.420
	SRR5643515	five period of Gastrodia elata	29.150
	SRR5643524	five period of Gastrodia elata	29.080
	SRR5643525	five period of Gastrodia elata	36.080
	SRR5643528	five period of Gastrodia elata	28.690
	SRR5643658	five period of Gastrodia elata	29.350
	SRR5643659	five period of Gastrodia elata	37.600
	SRR5643660	five period of Gastrodia elata	43.370
	SRR5643661	five period of Gastrodia elata	43.690
	SRR5643662	five period of Gastrodia elata	43.050
	SRR5643663	five period of Gastrodia elata	35.880
	SRR5643664	five period of Gastrodia elata	39.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.260
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	34.800
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	29.240
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	28.430
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.590
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	24.310
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	29.200
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	24.030
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.880
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	28.720
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	32.780
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	32.780
SRP279888	Gastro	Gastrodia elata tuber	35.08
	Juven	Juvenile tuber	24.51
	Mother_Gastro	Mother tuber of Gastrodia elata	19.66
	Mother_Juven	Mother tuber of Juvenile	16.73