Detail information of GWHGAAEX002636/evm.TU.scaffold_121.109
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3490 | 4.00E-25 | Transcription elongation factor SPT4 |
| nr | gi|695072874|ref|XP_009383580.1| | 8.15E-82 | PREDICTED: transcription elongation factor SPT4 homolog 2-like isoform X1 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q94C60|SPT42_ARATH | 7.00E-61 | Transcription elongation factor SPT4 homolog 2 |
| trEMBL | tr|M0RRS4|M0RRS4_MUSAM | 7.00E-83 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr11P12940_001} |
| TAIR | AT5G63670 | 4.00E-25 | SPT4 homolog 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 2523784 | 2555831 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002636
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06093.12 | Spt4 | 30 | 106 | 5.20E-31 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0032786 | Biological Process | positive regulation of DNA-templated transcription, elongation |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 20.100 |
| SRR2545915 | Juvenile tuber | 16.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 30.430 |
| SRR5643514 | five period of Gastrodia elata | 37.290 | |
| SRR5643515 | five period of Gastrodia elata | 30.660 | |
| SRR5643524 | five period of Gastrodia elata | 38.080 | |
| SRR5643525 | five period of Gastrodia elata | 45.290 | |
| SRR5643528 | five period of Gastrodia elata | 32.430 | |
| SRR5643658 | five period of Gastrodia elata | 32.830 | |
| SRR5643659 | five period of Gastrodia elata | 37.580 | |
| SRR5643660 | five period of Gastrodia elata | 42.950 | |
| SRR5643661 | five period of Gastrodia elata | 32.430 | |
| SRR5643662 | five period of Gastrodia elata | 35.240 | |
| SRR5643663 | five period of Gastrodia elata | 30.640 | |
| SRR5643664 | five period of Gastrodia elata | 36.000 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.270 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 49.860 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.430 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.390 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.210 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 14.280 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.360 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.550 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.240 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.810 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 38.600 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 38.600 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.92 |
| Juven | Juvenile tuber | 22.61 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 31.13 | |
| Mother_Juven | Mother tuber of Juvenile | 17.15 |