Gene detail

Detail information of GWHGAAEX002638/evm.TU.scaffold_121.111

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4468	1.00E-28	Polycomb-group transcriptional regulator
nr	gi\|743813700\|ref\|XP_010929795.1\|	2.91E-60	PREDICTED: TSL-kinase interacting protein 1-like isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8LJT8\|TKI1_ARATH	8.00E-42	TSL-kinase interacting protein 1
trEMBL	tr\|M0S8N4\|M0S8N4_MUSAM	7.00E-58	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr2P16930_001}
TAIR	AT2G36960	1.00E-28	TSL-kinase interacting protein 1

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	2641045	2644809	+

Transcript Sequence
>GWHTAAEX002638 ATTTTCTTACATTGGTTAATTTTCATTTTAATTTTTTTCAAGTTATTTATTACATCATATATGAGAACTACTTTTTGGGCTAATTTAACTGACTGATTACATAGAAATATGGATGAGCACTGAGATTGAGGAATTTATTTGATTGTTTGGTTCGTATTATTGATTTTTGGAGAAGGCAAGTTTGGAAGTTGTTTGTAGGACCAATGTAACCAAAGCAGTTGGGATATTGATCTGTCATGTGTGTGACCTTCCTTTAATCGAAATTTAGCTGAAATTGTTTTCCCAAACTTATTGTTTTAGTTTTTTAGGATTTGATGTATAAATATCTAACGCATGGATTGGAGTCATCTTATTGCGTTAATAAAATTATTTTGCGAGTGCAGTTGTTTTCATGAATTATTTCAGGTGTAGCAATGGTGACTATTTAATTAGTTTAGAGTTTAGGGTTTAGTTGATTCTGGGGTAAGTCTTATGATTAACCTGTGCATGTGCTTAACCACTCTTTTAATTGAAACTTAGCTGAAATTGTTTCCCTAAATTTTTTATTTTAGTTTAAGAATTTTATATATAAATATCTAACGCATATATCGGAGTCATCTTATTACATGAATAAAATTATTTTATGAGTGCAGTTGTTTTCATGATTCATTTCAGTGTGTAACAAGGATCACTTTTTGATTAGTTTAGTGTTTAGTTGATTCATAGGTAGGACTTTTCCTTTGACGCTTGTCCCAACTACTTCGGCATTTTTTTATTATAAATGAAAATTGCTTTTTAAATAGAAAAGTACATTTTTTGAAGAAAGTTGGAGATTTTCAAGAAACCATTCAGGGCTCTTTCAAATATTTTTCTTTGTTCTTGAGGGTTGAGACTTCTTTTATTGTTTGTTTTCCATTGCCTCTTGTTTTATTTCTTTAATTTATGGTGCACTCACAGATATCTAGCCACTTGATTTAACACTTGTTGCATGTACTATTTATGAGTTAGCTATTTGGCCTTTTCCACATTGGATTATGCATGCATGCTAGAACTATTTTGATTGTATTTAAATGATTAGGGTTGAAATTTGGATTATCCTTCTCCCGCATCGCTTCTACATATTCTTGGCGAAGCTGAATTAGTGAACATGAAATCTGCTGGACAGAGTAAAGAAACTATTGATTCCTCTGTGAAGGATAAATCTAGTGAAGATGCTGATAAAATAGAACAGGATTTTTCTTTGAAAAGTAAAGCTGCTCGAAGACTTGGTTGCAGGAAAATTGCAACCTCATTTGGGAGGACAACTAAACGGAGCGGCAAAACTGCTGATTTGAAGCAATGTGATGACATTAAACGCTTGAAGCCGTCTCCTGACCAGTCGATATTGGATGCAACAGCCCTATTGTTACATCAACAGTCTTCCATAATAACACCTATCGGAGCTCAGAATACGCTTATCGAAGCTTCAACGCCGGTTAGAGTGCCATGTCCTTTTCAGATTCAAAAGTTTCATCTTCAGTTATTTCCTATGGATGACCCTACTCGCAAGTGTTTATTGGAGAAGAACCACAGCCCTTACTTGGAGCTAACTATAACAGCAAAAAAGAAGATATCTTCAGTAATTAGACATCTCAATATCAAGTGGGGAAGTTCCAGAAGTGCATCGGAAGAGCTCATTCTCTTTCCCTACAATGCCCGGGCGGAAAACTTCGTAAGCTGTAAAAGATGGACTTCAAGGGACTCTAATATCACTGCAGCTGATGTTTATACCACCATTGGTAAACCAGCTGTTTTTAGACTAAGGTACGGTTGGCTCAGTATCCTTGAGCCAAATATTAGTAAATTGAACAATCAGTTTAAATTCATGGAAAGCCAGAAAAGAGGTTTGAATGATCAAGAAAGAAAGCCGGTTGATGGACTGCTGCAGAAACAAGTTGGTCAAGAAACTCCTCCCAAGAAGACGATTCGAGCACCGGACAATCTGAGACCTGACAATGGTGCCAAGCTTTCATGGGTTGATTGCTTATCGAACATGAGTTTTGGAGCTCTATTTTCCGAAGCAGAAGCAGCCGAAGGCGCTAAGGTTCCTCAGAAGCAGGTCTCAATGAGCTGCGACTCTTTTGATGCTGCAGTTGCGGCCCATATCACCAGATTTCAGCAGCCCAGAAACCAATCAGAATCTCAGCCTTCCATTCTGGACGCTGAGGAAACTTGCAACCCGTTCTCCTTCCACAGCTGCACTTCTTCGAACAGAACCGGCCGGGAAGACGAGGAAGCAAGGCCGGCTGATACAGATCCGACAAACAATGCAGATGCTAACCAGATTGGGGTGCTTGACATGCATTGGGTACTCATTCTACTACCCTCCCAAATGTTGCTACTTGTGCTTTTATTTTGCTATCGGCTTTTTTTTTTTGTACCTTTTACTGTGCAGCCGCCTTCGACGGGTCCCTGGCAATTCCTTGTTTCTTCTTCCCAGCAGATGATCAACTGCGACAGCAATGGCCTCAGTGGGTTTACTGCAGCCAGTCTTGATATATTTTAAGGGAACTTTTTTCTGGATTATAGACCGTTTGTCATAGTTGAAAAGTTGAGATTTTTGCCCCAAATCTTTGGCATGTTCAAAAAGAGAACATCTTCATCTCACATTTTACTTGATGAGCTAAGTTGAATATTAAGGAGCTTCTCATGCAAGCTATAAAAAGATCCAGATTTTGAGTGTTTAAAGATTTGGGTGATGCGTGCTGTTATATTACTATTTAACTGTTTTTAACAGCATTTCAAACAGCCCCTGTATTTGAAAGTAAATAAATATTAAAAGAAGGAATGCAATTTGAACAAAATGAGGCCGTACAAAATTAGATCTTCTTTTTTAAAAAAATTTATTTTCTTATTGACGATTATTTCAAATCAAGTATTTTTTTATTAATTATTTTTCTGGAAAAACTCATTGAAGCATTTTAAATGAATGCTCTTTTAAAGGTAATTATCACACTGATAAAAACAATTTATGAAATATGTTGAAAATGTAAGATTTTATGAAATATGTTGCTTGCCGTATACTATGAAAACG

Network for GWHGAAEX002638

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.900
SRP064423	SRR2545915	Juvenile tuber	30.710
SRP108465	SRR5643513	five period of Gastrodia elata	19.750
	SRR5643514	five period of Gastrodia elata	22.860
	SRR5643515	five period of Gastrodia elata	18.530
	SRR5643524	five period of Gastrodia elata	20.010
	SRR5643525	five period of Gastrodia elata	23.280
	SRR5643528	five period of Gastrodia elata	13.360
	SRR5643658	five period of Gastrodia elata	24.940
	SRR5643659	five period of Gastrodia elata	24.910
	SRR5643660	five period of Gastrodia elata	20.870
	SRR5643661	five period of Gastrodia elata	18.790
	SRR5643662	five period of Gastrodia elata	25.160
	SRR5643663	five period of Gastrodia elata	30.060
	SRR5643664	five period of Gastrodia elata	30.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.410
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	26.810
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.810
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	23.640
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	18.850
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	19.330
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	19.690
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.620
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	14.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.980
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.250
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.250
SRP279888	Gastro	Gastrodia elata tuber	33.52
	Juven	Juvenile tuber	31.22
	Mother_Gastro	Mother tuber of Gastrodia elata	22.91
	Mother_Juven	Mother tuber of Juvenile	20.04