Detail information of GWHGAAEX002639/evm.TU.scaffold_121.112
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|325294259|ref|YP_004280773.1| | 1.00E-70 | acetyl-CoA carboxylase, biotin carboxylase [Desulfurobacterium thermolithotrophum DSM 11699] |
| KOG | KOG0368 | 0 | Acetyl-CoA carboxylase |
| nr | gi|743773162|ref|XP_010916914.1| | 0 | PREDICTED: acetyl-CoA carboxylase 1-like [Elaeis guineensis] |
| Swissprot | tr|Q8S6N5|ACC1_ORYSJ | 0 | Biotin carboxylase |
| trEMBL | tr|M0RJH5|M0RJH5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr10P19000_001} |
| TAIR | AT1G36160 | 0 | acetyl-CoA carboxylase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 2647546 | 2667608 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002639
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00289.21 | Biotin_carb_N | 39 | 157 | 8.70E-30 |
| PF02786.16 | CPSase_L_D2 | 206 | 402 | 4.70E-40 |
| PF02785.18 | Biotin_carb_C | 449 | 555 | 4.40E-21 |
| PF00364.21 | Biotin_lipoyl | 709 | 772 | 1.40E-08 |
| PF08326.11 | ACC_central | 773 | 1523 | 2.10E-193 |
| PF01039.21 | Carboxyl_trans | 1627 | 2179 | 6.50E-167 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006633 | Biological Process | fatty acid biosynthetic process |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016874 | Molecular Function | ligase activity |
| GO:0003989 | Molecular Function | acetyl-CoA carboxylase activity |
| GO:0046872 | Molecular Function | metal ion binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 125.960 |
| SRR2545915 | Juvenile tuber | 92.370 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 47.570 |
| SRR5643514 | five period of Gastrodia elata | 47.950 | |
| SRR5643515 | five period of Gastrodia elata | 50.430 | |
| SRR5643524 | five period of Gastrodia elata | 58.460 | |
| SRR5643525 | five period of Gastrodia elata | 48.230 | |
| SRR5643528 | five period of Gastrodia elata | 121.200 | |
| SRR5643658 | five period of Gastrodia elata | 54.250 | |
| SRR5643659 | five period of Gastrodia elata | 57.890 | |
| SRR5643660 | five period of Gastrodia elata | 67.110 | |
| SRR5643661 | five period of Gastrodia elata | 59.290 | |
| SRR5643662 | five period of Gastrodia elata | 51.780 | |
| SRR5643663 | five period of Gastrodia elata | 55.400 | |
| SRR5643664 | five period of Gastrodia elata | 59.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 51.580 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 35.460 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 45.950 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 64.450 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 67.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 75.640 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 59.990 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 67.840 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 39.730 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 41.600 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 41.900 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 41.900 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 56.26 |
| Juven | Juvenile tuber | 82.85 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 79.00 | |
| Mother_Juven | Mother tuber of Juvenile | 91.86 |