Detail information of GWHGAAEX002642/evm.TU.scaffold_121.115


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|315122746|ref|YP_004063235.1|3.00E-1650S ribosomal protein L12 [Candidatus Liberibacter solanacearum CLso-ZC1]
KOGKOG17154.00E-39Mitochondrial/chloroplast ribosomal protein L12
nrgi|695066581|ref|XP_009380186.1|7.90E-54PREDICTED: 50S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368}-like [Musa acuminata subsp. malaccensis]
Swissprottr|Q1XDE8|RK12_PYRYE4.00E-2050S ribosomal protein L12, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00368}
trEMBLtr|M5VI87|M5VI87_PRUPE4.00E-52Uncharacterized protein {ECO:0000313|EMBL:EMJ00834.1}
TAIRAT4G376604.00E-39Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012527176872769556-
Transcript Sequence

Network for GWHGAAEX002642

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00542.18Ribosomal_L12971611.90E-22
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K02935RP-L7, MRPL12, rplL Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms7.260
SRR2545915Juvenile tuber14.170
SRP108465SRR5643513five period of Gastrodia elata15.450
SRR5643514five period of Gastrodia elata15.860
SRR5643515five period of Gastrodia elata15.170
SRR5643524five period of Gastrodia elata14.950
SRR5643525five period of Gastrodia elata13.730
SRR5643528five period of Gastrodia elata15.120
SRR5643658five period of Gastrodia elata16.670
SRR5643659five period of Gastrodia elata20.390
SRR5643660five period of Gastrodia elata15.230
SRR5643661five period of Gastrodia elata25.230
SRR5643662five period of Gastrodia elata26.880
SRR5643663five period of Gastrodia elata21.540
SRR5643664five period of Gastrodia elata26.910
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_114.990
SRR6049655Rhizomagastrodiae_C368-T10_good_113.910
SRR6049656Rhizomagastrodiae_C368-T07_good_115.910
SRR6049657Rhizomagastrodiae_C368-T07_good_114.540
SRR6049658Rhizomagastrodiae_C368-T04_good_112.500
SRR6049659Rhizomagastrodiae_C368-T04_good_112.460
SRR6049660Rhizomagastrodiae_C368-T01_good_112.790
SRR6049661Rhizomagastrodiae_C368-T04_good_112.860
SRR6049662Rhizomagastrodiae_C368-T01_good_112.790
SRR6049663Rhizomagastrodiae_C368-T01_good_112.800
SRR6049664Rhizomagastrodiae_C368-T10_good_114.770
SRR6049665Rhizomagastrodiae_C368-T10_good_114.770
SRP279888GastroGastrodia elata tuber 19.99
JuvenJuvenile tuber14.37
Mother_GastroMother tuber of Gastrodia elata 11.33
Mother_JuvenMother tuber of Juvenile 8.61