Gene detail

Detail information of GWHGAAEX002643/evm.TU.scaffold_121.116

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|408402656\|ref\|YP_006860639.1\|	7.00E-13	Kelch repeat-containing protein [Candidatus Nitrososphaera gargensis Ga9.2]
KOG	KOG1072	0	FOG: Kelch repeat
nr	gi\|672157426\|ref\|XP_008798422.1\|	0	PREDICTED: F-box/kelch-repeat protein At1g22040 [Phoenix dactylifera]
Swissprot	tr\|Q9LM55\|FBK8_ARATH	0	F-box/kelch-repeat protein At1g22040
trEMBL	tr\|F6H0U8\|F6H0U8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB45545.1}
TAIR	AT1G22040	0	Galactose oxidase/kelch repeat superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000125	2771247	2774571	+

Transcript Sequence
>GWHTAAEX002643 TAATAAATGGGAAATAAATAATAGACCGTGTTGGCTTCGTTGAATTCCTAGAAAGTGTGCTTTGAAGCCCTAAAATCTTTATCTAAGCGTGCAGAGCCTCTGAGAGCATATCGTCTTTGATTTTGACTCTGCTTTCGGTCTCTTTAATGCTATTTTTATCTCACCCAAATCCGGAGACTGCTTTTGTAGTGCTGAAAAGCCCTTTCAAGAATCAATTGCGTTTCTATATCTCTGCCTCTGTGATCCATTCTAAATCTGCAAGTTAGATGATTTAGAGTTTTGGTAGTGCATTTAATGGTAAAAATAATGCTAGTTTAAGACAAGGGGAAGACTTCAACAAAGGTTTTGAATTTCTCGCTTTTCTATATAGAGTTTGGATGGGGTCATTCTTGAGCATCCCGGTCAACAAACATAAAGAGAACTTGGGTTGCGAAGTCAATCAGGCAGAAGTCTTTAGCAAGAGACTGAAGATGTCATCAAGTTTTAACAATGAGAATCCAAGACTAATTCCAAGCCTGCCTGATGAAATTTCTCAGATGATCCTTGCAAGAATACCCAGAATTTACTACTTGGAATTAAAAATGGTCTCACGTAGTTGGAAGGTTGCTATAACCAGTGCCGAAATATATCTGCTCAGAAAAGAGCTGGGAACAACGGAAGAATGGCTCTACATCCTTACAAAGGTTGAAGAGGATAAGCTATTATGGCATGCTTTGGACCCTTTATCACGAAAATGGCAGAGGCTGCCACCCATGCCTAATCTTGTTTGTGAAGAGAAATCTAAAAGAGGCCTTTCTGGGTTTCTTATGTGGAGTGTGATGGGCTCTAGTATTAGAATCGCAGATGTTATTAGAGGATGGCTTGGCCGGAGGGATACACTGGAACGCTTGCCGTTCTGTGGTTGTGCTGTAGGAACTGTTGACGGCTGCCTCTATGTGTTAGGCGGATTTTCCAAGGCATTTGCAATGAAGTGTGTCTGGCGATACGATCCTGTCATCAATTTGTGGCAGGAAGTGAGCTCAATGACTACTGGAAGGGCTTTCTGCAAGGCGAGTCTCCTGAACAACAAACTATATGTTCTCGGTGGAGTCAGTAAAGGCCGTGGCGGTTTGACTCCTCTTCAATCTGCCGAAGTTTATGACCCTGAAACTGGTTTATGGACAGAAGTAAAAAGCATGCCTTTCTCGAAAGCCCAGACTCTACCGACTGCCTTTCTTGCTGAATTGCTGAAGCCTATTGCAACGGGAATGACTTCGTATAGAGGAAGGTTGTGTGTGCCTCAAAGCTTGTACTCTTGGCCCTTTTTCGTCGATGTTGGAGGTGAAATTTATGATCCTGACACTGATTTGTGGACGGATATGCCTGCTGGTATGGGTGAAGGCTGGCCTGCACGGCAGGCAGGAACGAAATTGAGCGTGGTTGTGGATAATGAGTTATATTCTTTGGAACCTTCTGGCTCGTTGGATAGCGGTAAGATAAAAGTATATGACCACCAGGAGGATGCTTGGAAAGTTGTGATTGGCAAAGTTCCAGTTCATGATTTCACTGATTCAGAATCTCCTTATTTACTCGCCTGTCTTTTGGGGAAGCTTCATGTGATTACTAAAGATGCTCATAATGGTACTGCCGTATTACAAGCTGATTTGAATAAGCAATTGCATTTGCAAAGAAATGCATCTTCCGATGGAGCCAGCACCTCATCTGAAAATCACGGTTTATTGGCTGAAGAACCTGAAGTTTGGAAGGTTATTGCTGCTAAGAATTTTGGGACAGCAGAGTTAGCTAGCTGTCTTGTTATTGGCATTTGACTTGTGCGATAAAGAAGCTATGACTGTATGACTTTACCAACCAATAATGCACATATAGTTTGTACATCTGGGTATAGAAATCATATCTAGTGATATTTTGAAGAAGTACCGGCACAAGCCTTTGAAAAATGCTTATTGAGCTCAAGAATGCCTTTAATGTGATATGTAGGACGCTTGATTCTATCTTATGTTTGGAATTCAAAGCCCGAAGATACTTGAACGATTCGTGCTATTTTGTCGTGTTCTTTTATTCTACAAAAGATGCTTGAGCTGTCAAAATGGTCCTCCGACTTTGAAATTGTCTAAAATAATTCTTTATTCTAATCTCAAATTTATCCCCCAACTCTTAAAATGTTGCAAAATTAGCCCCATAGTTAATTTTAGTAGTCACATTAACTTGCGCTATGAACGAGCAGTATTTTGAAAAGAAAAAAATGCAGTTGAAGTTGTTAACTGTTCGTTTATTTGCTTCTTACCAGAATGCCAATTTGAACACAATAGTTGAAGTCACTAATTATAGGGTTTATGGTAAAAAAGAACTAAATGTATAATTTATTGACTTCAACCATATTTTTTGTTACTCGTTAATTGTAATTATGCAATTAGTGTGACATTGAAAGTTAGCGGTGAGAGTTTATTTGCATCATTTTTAAAAGCTGAGGGACCATAGTGAGATTTGCAAAGTATTATTTTGAACAATTTTAAATAGTCGGGGACTTATAGCAAATAATTCTATACTTTTGTCAAAAATGTTAAATTAAGCGGAATAACTTTCCTTTCACTTTGCATAGAAATAGAACACTTAATCAGAAGATGTGATGCTTTGAGATGTGATGTTGCTTTTCTCTTGACATGTTAGATGCTATCTTATATTTCCTACTTGTTAATAAATTCCTCTTGTTTTCATCTTCAGCTATCCTCCTTTTTTTACTGATCGTGGAAAAGAATGTATTTCAGGAGGCTTCGAATGATAAAGCATTTTTTTTCTTATTTACAATAGAATTTTTATTTTTCATCTTTGCAACTTATCATGAGTTAATTGATTTATTTAAGTGATCGTGCTTTAATTTCGAATAGCATATTTTTGCTGAAAGATTTATCTTACAGGGTAAAACAATGGAAGCTGTTTTTTTAATTTTCACATGTTTGCAGAATTTCAGCTTGTATTCTTTTTATGGTATTTCTAATTTCAATGCTCTCATACCTTCACAG

Network for GWHGAAEX002643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module8

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00646.32	F-box	44	82	5.00E-05
PF01344.24	Kelch_1	172	216	6.50E-13
PF01344.24	Kelch_1	220	268	2.00E-11

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	138.830
SRP064423	SRR2545915	Juvenile tuber	108.270
SRP108465	SRR5643513	five period of Gastrodia elata	33.940
	SRR5643514	five period of Gastrodia elata	28.120
	SRR5643515	five period of Gastrodia elata	43.370
	SRR5643524	five period of Gastrodia elata	29.550
	SRR5643525	five period of Gastrodia elata	67.940
	SRR5643528	five period of Gastrodia elata	68.950
	SRR5643658	five period of Gastrodia elata	55.210
	SRR5643659	five period of Gastrodia elata	50.990
	SRR5643660	five period of Gastrodia elata	55.940
	SRR5643661	five period of Gastrodia elata	54.780
	SRR5643662	five period of Gastrodia elata	52.330
	SRR5643663	five period of Gastrodia elata	49.810
	SRR5643664	five period of Gastrodia elata	64.080
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	50.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	30.610
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.590
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.590
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.610
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	78.520
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.630
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	56.180
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.280
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	37.360
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.060
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.060
SRP279888	Gastro	Gastrodia elata tuber	36.56
	Juven	Juvenile tuber	13.82
	Mother_Gastro	Mother tuber of Gastrodia elata	48.30
	Mother_Juven	Mother tuber of Juvenile	24.30