Detail information of GWHGAAEX002647/evm.TU.scaffold_121.121
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|146298365|ref|YP_001192956.1| | 3.00E-28 | two component regulator [Flavobacterium johnsoniae UW101] |
| nr | gi|743773218|ref|XP_010916945.1| | 0 | PREDICTED: probable inactive receptor kinase At5g10020 [Elaeis guineensis] |
| Swissprot | tr|Q0WR59|Y5020_ARATH | 0 | Probable inactive receptor kinase At5g10020 (Precursor) |
| trEMBL | tr|J3MN66|J3MN66_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB07G28480.1} |
| TAIR | AT5G10020 | 0 | Leucine-rich receptor-like protein kinase family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 2843504 | 2847919 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002647
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 84 | 133 | 2.20E-05 |
| PF00560.32 | LRR_1 | 383 | 404 | 0.83 |
| PF13855.5 | LRR_8 | 475 | 534 | 3.50E-07 |
| PF00069.24 | Pkinase | 745 | 945 | 1.20E-24 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-III |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.440 |
| SRR2545915 | Juvenile tuber | 5.990 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 6.000 |
| SRR5643514 | five period of Gastrodia elata | 6.650 | |
| SRR5643515 | five period of Gastrodia elata | 4.880 | |
| SRR5643524 | five period of Gastrodia elata | 6.520 | |
| SRR5643525 | five period of Gastrodia elata | 6.980 | |
| SRR5643528 | five period of Gastrodia elata | 3.120 | |
| SRR5643658 | five period of Gastrodia elata | 4.550 | |
| SRR5643659 | five period of Gastrodia elata | 8.100 | |
| SRR5643660 | five period of Gastrodia elata | 7.770 | |
| SRR5643661 | five period of Gastrodia elata | 8.100 | |
| SRR5643662 | five period of Gastrodia elata | 6.520 | |
| SRR5643663 | five period of Gastrodia elata | 6.840 | |
| SRR5643664 | five period of Gastrodia elata | 7.680 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.370 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 7.380 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.290 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 7.770 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 6.290 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.540 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 10.660 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 11.570 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 11.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 8.150 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 8.150 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.87 |
| Juven | Juvenile tuber | 10.95 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.00 | |
| Mother_Juven | Mother tuber of Juvenile | 7.35 |