Detail information of GWHGAAEX002654/evm.TU.scaffold_121.129
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428320056|ref|YP_007117938.1| | 0 | ABC transporter related protein [Oscillatoria nigro-viridis PCC 7112] |
| KOG | KOG0927 | 0 | Predicted transporter (ABC superfamily) |
| nr | gi|672182661|ref|XP_008811580.1| | 0 | PREDICTED: ABC transporter F family member 5-like [Phoenix dactylifera] |
| Swissprot | tr|Q9LV93|AB5F_ARATH | 0 | ABC transporter F family member 5 |
| trEMBL | tr|B9HG24|B9HG24_POPTR | 0 | ABC transporter family protein {ECO:0000313|EMBL:EEE90481.2} |
| TAIR | AT5G64840 | 0 | general control non-repressible 5 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000125 | 3018559 | 3050521 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002654
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00005.26 | ABC_tran | 134 | 309 | 8.00E-24 |
| PF12848.6 | ABC_tran_Xtn | 348 | 429 | 8.50E-18 |
| PF00005.26 | ABC_tran | 463 | 593 | 3.40E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016887 | Molecular Function | ATPase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 33.590 |
| SRR2545915 | Juvenile tuber | 45.450 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 16.670 |
| SRR5643514 | five period of Gastrodia elata | 21.820 | |
| SRR5643515 | five period of Gastrodia elata | 18.940 | |
| SRR5643524 | five period of Gastrodia elata | 20.760 | |
| SRR5643525 | five period of Gastrodia elata | 15.530 | |
| SRR5643528 | five period of Gastrodia elata | 13.280 | |
| SRR5643658 | five period of Gastrodia elata | 13.980 | |
| SRR5643659 | five period of Gastrodia elata | 28.320 | |
| SRR5643660 | five period of Gastrodia elata | 31.740 | |
| SRR5643661 | five period of Gastrodia elata | 29.400 | |
| SRR5643662 | five period of Gastrodia elata | 34.060 | |
| SRR5643663 | five period of Gastrodia elata | 33.580 | |
| SRR5643664 | five period of Gastrodia elata | 33.500 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 20.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.890 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 15.320 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 21.710 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.640 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.100 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 16.180 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 16.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 14.600 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 16.160 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.320 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.320 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 30.66 |
| Juven | Juvenile tuber | 23.74 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 11.92 | |
| Mother_Juven | Mother tuber of Juvenile | 15.08 |