Detail information of GWHGAAEX002655/evm.TU.scaffold_121.130


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|22775655|dbj|BAC15509.1|4.76E-16hypothetical protein [Oryza sativa Japonica Group]
Swissprottr|Q9FH50|APO3_ARATH1.00E-15APO protein 3, mitochondrial (Precursor)
trEMBLtr|Q8H595|Q8H595_ORYSJ2.00E-16Putative uncharacterized protein OJ1634_B10.121 {ECO:0000313|EMBL:BAC15509.1}
TAIRAT5G619305.00E-15Arabidopsis thaliana protein of unknown function (DUF794)

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012530518403053746+
Transcript Sequence

Network for GWHGAAEX002655

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05634.10APO_RNA-bind19588.40E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms3.580
SRR2545915Juvenile tuber1.740
SRP108465SRR5643513five period of Gastrodia elata2.250
SRR5643514five period of Gastrodia elata1.790
SRR5643515five period of Gastrodia elata1.380
SRR5643524five period of Gastrodia elata2.300
SRR5643525five period of Gastrodia elata1.130
SRR5643528five period of Gastrodia elata0.000
SRR5643658five period of Gastrodia elata2.390
SRR5643659five period of Gastrodia elata3.490
SRR5643660five period of Gastrodia elata2.010
SRR5643661five period of Gastrodia elata1.320
SRR5643662five period of Gastrodia elata0.710
SRR5643663five period of Gastrodia elata5.550
SRR5643664five period of Gastrodia elata4.980
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_13.120
SRR6049655Rhizomagastrodiae_C368-T10_good_10.000
SRR6049656Rhizomagastrodiae_C368-T07_good_16.250
SRR6049657Rhizomagastrodiae_C368-T07_good_16.250
SRR6049658Rhizomagastrodiae_C368-T04_good_16.120
SRR6049659Rhizomagastrodiae_C368-T04_good_13.090
SRR6049660Rhizomagastrodiae_C368-T01_good_14.810
SRR6049661Rhizomagastrodiae_C368-T04_good_13.930
SRR6049662Rhizomagastrodiae_C368-T01_good_12.230
SRR6049663Rhizomagastrodiae_C368-T01_good_13.630
SRR6049664Rhizomagastrodiae_C368-T10_good_13.640
SRR6049665Rhizomagastrodiae_C368-T10_good_13.640
SRP279888GastroGastrodia elata tuber 1.77
JuvenJuvenile tuber1.62
Mother_GastroMother tuber of Gastrodia elata 0.00
Mother_JuvenMother tuber of Juvenile 0.60