Detail information of GWHGAAEX002660/evm.TU.scaffold_122.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG34672.00E-66Histone H4
nrgi|195617694|gb|ACG30677.1|8.72E-66histone H4 [Zea mays]
Swissprottr|P0CG89|H4_SOYBN7.00E-67Histone H4
trEMBLtr|Q5NSW2|Q5NSW2_FRAAN5.00E-65Histone H4 {ECO:0000256|RuleBase:RU000528} (Fragment)
TAIRAT5G599702.00E-66Histone superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000001231315313945-
Transcript Sequence

Network for GWHGAAEX002660

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15511.5CENP-T_C35961.40E-08
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046982Molecular Functionprotein heterodimerization activity
GO:0003677Molecular FunctionDNA binding
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms15.270
SRR2545915Juvenile tuber16.040
SRP108465SRR5643513five period of Gastrodia elata47.740
SRR5643514five period of Gastrodia elata70.930
SRR5643515five period of Gastrodia elata37.020
SRR5643524five period of Gastrodia elata56.010
SRR5643525five period of Gastrodia elata40.530
SRR5643528five period of Gastrodia elata22.130
SRR5643658five period of Gastrodia elata20.890
SRR5643659five period of Gastrodia elata29.140
SRR5643660five period of Gastrodia elata31.030
SRR5643661five period of Gastrodia elata33.930
SRR5643662five period of Gastrodia elata26.930
SRR5643663five period of Gastrodia elata21.970
SRR5643664five period of Gastrodia elata24.350
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_134.990
SRR6049655Rhizomagastrodiae_C368-T10_good_167.480
SRR6049656Rhizomagastrodiae_C368-T07_good_162.390
SRR6049657Rhizomagastrodiae_C368-T07_good_137.110
SRR6049658Rhizomagastrodiae_C368-T04_good_133.680
SRR6049659Rhizomagastrodiae_C368-T04_good_121.690
SRR6049660Rhizomagastrodiae_C368-T01_good_140.460
SRR6049661Rhizomagastrodiae_C368-T04_good_135.500
SRR6049662Rhizomagastrodiae_C368-T01_good_161.530
SRR6049663Rhizomagastrodiae_C368-T01_good_151.190
SRR6049664Rhizomagastrodiae_C368-T10_good_176.780
SRR6049665Rhizomagastrodiae_C368-T10_good_176.780
SRP279888GastroGastrodia elata tuber 23.22
JuvenJuvenile tuber21.37
Mother_GastroMother tuber of Gastrodia elata 44.48
Mother_JuvenMother tuber of Juvenile 13.47