Detail information of GWHGAAEX002662/evm.TU.scaffold_122.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|379728659|ref|YP_005320855.1| | 4.00E-93 | sulfate transporter [Saprospira grandis str. Lewin] |
| KOG | KOG0236 | 0 | Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) |
| nr | gi|743849396|ref|XP_010939616.1| | 0 | PREDICTED: sulfate transporter 1.3-like [Elaeis guineensis] |
| Swissprot | tr|P53392|SUT2_STYHA | 0 | High affinity sulfate transporter 2 |
| trEMBL | tr|J3MSW0|J3MSW0_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB08G21900.1} |
| TAIR | AT4G08620 | 0 | sulphate transporter 1;1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000123 | 120045 | 127631 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002662
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00916.19 | Sulfate_transp | 96 | 477 | 2.20E-136 |
| PF01740.20 | STAS | 530 | 648 | 2.20E-30 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055085 | Biological Process | transmembrane transport |
| GO:0008272 | Biological Process | sulfate transport |
| GO:0008271 | Molecular Function | secondary active sulfate transmembrane transporter activity |
| GO:0015116 | Molecular Function | sulfate transmembrane transporter activity |
| GO:0016021 | Cellular Component | integral component of membrane |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 4.260 |
| SRR2545915 | Juvenile tuber | 8.480 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 8.340 |
| SRR5643514 | five period of Gastrodia elata | 16.840 | |
| SRR5643515 | five period of Gastrodia elata | 9.580 | |
| SRR5643524 | five period of Gastrodia elata | 9.430 | |
| SRR5643525 | five period of Gastrodia elata | 7.150 | |
| SRR5643528 | five period of Gastrodia elata | 4.620 | |
| SRR5643658 | five period of Gastrodia elata | 4.250 | |
| SRR5643659 | five period of Gastrodia elata | 8.370 | |
| SRR5643660 | five period of Gastrodia elata | 4.630 | |
| SRR5643661 | five period of Gastrodia elata | 5.660 | |
| SRR5643662 | five period of Gastrodia elata | 6.630 | |
| SRR5643663 | five period of Gastrodia elata | 6.060 | |
| SRR5643664 | five period of Gastrodia elata | 3.890 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 13.300 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 11.830 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.730 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.410 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 6.680 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.950 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 5.210 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.610 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.870 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 7.430 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.350 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.350 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 7.65 |
| Juven | Juvenile tuber | 6.43 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.92 | |
| Mother_Juven | Mother tuber of Juvenile | 2.87 |