Gene detail

Detail information of GWHGAAEX002663/evm.TU.scaffold_122.6

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|224082162\|ref\|XP_002306588.1\|	3.78E-36	senescence-associated family protein [Populus trichocarpa]
trEMBL	tr\|B9H760\|B9H760_POPTR	1.00E-36	Senescence-associated family protein {ECO:0000313\|EMBL:EEE93584.1}
TAIR	AT1G22160	2.00E-32	Protein of unknown function (DUF581)

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000123	232325	236221	-

Transcript Sequence
>GWHTAAEX002663 CCCTTTCTCTGTTATTTCTCTAAGATGCTTCTAGGCAAGAGACCTAGGGCACCCATGAAGCGCACGACGAGCATGACGGATGTTGCTTTGGATCTCGATTCTTCCGCCCCGACATCTCAGCCATCCGTTCTCAAGATAAATGCAATCGGCGAAGGAAATCAGCCGCGAAACTTGGTGGCTGTGTCATCGGGTTTAGCCTCGGTTTTACCGCCGTTTGGGTTACGGCGAGGCTCAGCCAACTCCGTGACGGCAGTTGAGACGGCTCCGTTTCTTAGGGCTTGTGCTCTCTGCAAGGGGCTTCTGCTTCCCGGCCGTGACATCTTCATGTATAGGGGCGAGATTGCGTTCTGCAGCGCGGAGTGTCGAGAGCAGCAGATAAAGCTGGATGAGAGGAAGGAGAAGACGAAATGCTCAGTTGCTTCCAGGGACGATTCGGCTCAGGCTCAGGCTAAAAAGGCGGCGACCTCCTCGAAGGCCGCCGGAAACAAGGAAACTGTGGCGGCTGCCTGATCAAAAGCTTGTTTTACTGATTATATTTCTATTCTGTACACTTTGTACATGCCTTGAAAGGGCATAAGAGCAGTATCCTTTTATTAGTAGAGAGCTCTTCTCTGGAGCTCATTCTTCATGTTAATCTGCTCTCCATTTTCTTTCTTTTTTGTTCTGTCCTGAGGATTTCTGTGGGAGGGGAGAAGAGAGCTGTTGCTACAAGTGAAAACGAGTGCTTATCTATCAGTTCTGTCACTTTATCAGCATCTTTTGATGGTGGATTATTCAAAACAGAATACTATAGTTGATTATTATTAATTCCTTCTTTTATGAACTTAATGTGGTATTATTGTGGCCTATATTTGAAAGTGCACACCATTGGTTGCCTGCAAAATGCTTGCTTAACAGTTCTATTTTTGATTTTTTGTGTTTTTGAAGAAGAAGATACAGAGTCACCAACACCATTCACTGCTGCTTAACGGATGGGTGGTGCTTTTGCTTTTTTCTTTTTCCTTAAAAGTTATAAAAAGGAAGTCACTTAGTCGGTTGTGGTGCTGCTTTAGTAGTTTAGGTTTCATCATCTTAAAATACTTTAATATTTATAAAATTTGGCAATTGCTTATAAAATTGGAGATGGATTGTTCTTCTCACTAATGTATTTTGTATGAGGCGAGAATCATTCATGCCATTGCCATGTTTGAAGATATTATCAAATGGCCGATATGCGCTGGTATAAAAGCTGAAGGACTGTTCATTAAGTTGATATTCCTATGCTATATGGGGGTCGGCTAAATAAATCATTTTAATCAATCAAATAGAAGTCTCTCACTAAGATTCAATTAGAGAAGATGCTTTTGTTTGGATTATACTTTTTCTCTTTCTTCTTCCTTTTTTCAAATCTATATTACAAGAAGGAACAAAATATAAAACAGGAGAGCAGTATCGCTCAGCCGAGTGGTGCTGCTTTATTGGGTCTTCTTTCATCGTACGCTGCTTTAATGTTTAAAAAATTTGGCAATTTCTTATAAAAATTGAGGAGAAGCTCTCGGTCGTTAGTTCTTGATGGTGATTCTAGGGTTCTCGTGCGGGTTCGGGTTCGAAAGCTCTCTCTCTTCTTCTTCTTGGTTGGCTTCTGTGCGAGATTTTTTTTTTTTCTTTTTTTCTTTTAAACAAAACTCACTCTAGTTTGGGTGAGTTTGCTAGGCCTAAGACTTCAATTGATTAACCACGGCACGTTTTTTATAGGTCTTTACAGCTTGATGAGAATACTTGTGCTTTGAGAAATGTCTCGACCCCGACCTCTCCGGCAATCTTCCATCTTGCTGGGGAGAATGGGTACTATCAAAACGTTCAGCATGAAATTTTGCCATATGTGCATTCTTTATGTTCTTATTTTGGGCACGACAATATTCATTGTGACGTGGCTTTGTGGTTGCAAGTAGACGATCCTCCAAAAATCATCTCAAGTGAAACGAGGTATATTTTGGAAGAGGGAGAAGCGGCCATGGAAGAACTTAGCAAGCAATATCTTCAGGAGAAGGAAAAGTGGCTTTGGAGGAACATTTGAATCACCAAGCAACAACAAGTAATACTCATCTTCTTGATTCCAAATTGATCAGTTATTTTACACATGTATGTATGCATACATGTATATATATTTATATGAAATAATATATTAAAATTTGTATGAAAAGCAACTTTTATCTTAAAA

Network for GWHGAAEX002663

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04570.13	zf-FLZ	76	124	8.20E-23

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	482.320
SRP064423	SRR2545915	Juvenile tuber	232.450
SRP108465	SRR5643513	five period of Gastrodia elata	86.350
	SRR5643514	five period of Gastrodia elata	180.550
	SRR5643515	five period of Gastrodia elata	82.500
	SRR5643524	five period of Gastrodia elata	107.560
	SRR5643525	five period of Gastrodia elata	337.150
	SRR5643528	five period of Gastrodia elata	169.530
	SRR5643658	five period of Gastrodia elata	320.800
	SRR5643659	five period of Gastrodia elata	193.990
	SRR5643660	five period of Gastrodia elata	222.350
	SRR5643661	five period of Gastrodia elata	180.170
	SRR5643662	five period of Gastrodia elata	292.060
	SRR5643663	five period of Gastrodia elata	301.380
	SRR5643664	five period of Gastrodia elata	380.220
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	305.660
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	144.730
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	273.570
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	282.340
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	287.770
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	334.550
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	282.990
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	219.680
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	208.980
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	346.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	255.220
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	255.220
SRP279888	Gastro	Gastrodia elata tuber	505.26
	Juven	Juvenile tuber	98.58
	Mother_Gastro	Mother tuber of Gastrodia elata	63.07
	Mother_Juven	Mother tuber of Juvenile	42.76