Gene detail

Detail information of GWHGAAEX002671/evm.TU.scaffold_122.21

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|262198376\|ref\|YP_003269585.1\|	3.00E-63	trehalose-phosphatase [Haliangium ochraceum DSM 14365]
KOG	KOG1050	1.00E-141	Trehalose-6-phosphate synthase component TPS1 and related subunits
nr	gi\|672134340\|ref\|XP_008790818.1\|	2.94E-163	PREDICTED: probable trehalose-phosphate phosphatase 6 [Phoenix dactylifera]
Swissprot	tr\|Q6ZAL2\|TPP6_ORYSJ	3.00E-147	Probable trehalose-phosphate phosphatase 6
trEMBL	tr\|F6I7F4\|F6I7F4_VITVI	4.00E-158	Trehalose 6-phosphate phosphatase {ECO:0000256\|RuleBase:RU361117} (Fragment)
TAIR	AT5G65140	1.00E-141	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000123	991702	994247	+

Transcript Sequence
>GWHTAAEX002671 ACTCCCAAAACCCTAAAATCCGAAAATGACGAATCAGAATATCGCCGTGCCCGAATCAATGGGAATCGCCGCCGGCTTCGGCCTTCATCGAAGGCGCCTGACTCAATTAGAAATTTCTGGGATCAATGTATGGATCGACACCATGAGAGCCTCCTCGCCTACGCGCAAATCCATGGCGGATCTGCGCGAGCGTTCCAGCTTGGCGATGATGAACCCATCAGCCCTCAGCATGTTCGACGAAATAACTAACGCTTCCAAGGGCAAACAGATTGTCATGTTTTTGGATTATGACGGCACGCTGTCGCCCATCGTTGATGATCCCGATCGCGCCTTCATGTCTGATGCGATGAGGGATGCGGTGAGGGAAGTGGCCCAATTTTTTCCGACGGCAATTGTAAGTGGCCGGCGTCGGAATAAGGTATACAGTTTTGTTAGATTGGCAGAGCTGTATTATGCCGGTAGCCATGGGATGGACATCAGAGTCCCAGCTAAGGGACCCAGCTTCAAAAAAGCCAATGGCAAGGCTGTTCTGTTTCAACCAGCTAGTAAATTTCGCCCGATGATAGAAAAGGTTTATAGAACCTTGCTGGAAGTGACTAAAACTACGCCCGGGGCCAAAGTGGAGAACAACAAGTTCTGTGTGTCGGTTCACTTCAGATGTGTGGAAGAAAAGAGATGGAGAGCTTTGGCTGATCGAATTAAATCAGTGGTGAAAGAGTACCCAAAGCTACGGTTATCACCAGGAAGAAAGGTGCTGGAGATTCGCCCCATTATTAAATGGGACAAAGGAAAGGCTATGGAATTCTTATTGGAGTCTCTTGGATTTGCCGACTGTAATGACGTGTTGCCTGTTTATATTGGAGATGATCTCACGGATGAAGATGCTTTCAAAGCCTTGAGAAACAGAGGACAAGGCTTTGGTATATTGGTTTCTAAGATTCCGAAAGAAACAAGCGCCTCTTATTCTCTCCAAGAGCCATCTGAAGTAAGCCTTGACGAGACATCAAATCCTTTGAATTGGAATATTTTTTATATTATATTTGTCTATGATTTGTTTTTTTCCGACTTTTTTGAAAATTTCTAAAGGTTATGTACTTCTTGCAACGGCTGGTGGAGTGGAAGAGGCTTACTTTGAATTGAATGAAGTCTTTGTACACTAGTAAAAGTATAGAATAGATTAGGTATGTGCCCCGCCCGCCGTCCCTTAAAGCTCAAGGGTGGATTGCTGGGGAGGTGATGCTCGTATTTTTCTACCAGGAAGGCAAAGGCAAAAATTCGAGAGCCTCGTGTACTTATTTATTCTCCTGGCCCTTTTGGATATTTGTTGGGCTACAAAGCATTGTAATCATAGCTTTACTGCCCTCCATAAGATGCCTGAGTGTTTGTAATTATTTTTATGTATAATGAAATAATAGTCAATAGCAATTGTCATATTGTTCTTTGTGGTC

Network for GWHGAAEX002671

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02358.15	Trehalose_PPase	85	319	1.70E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01087	otsB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0003824	Molecular Function	catalytic activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.400
SRP064423	SRR2545915	Juvenile tuber	4.090
SRP108465	SRR5643513	five period of Gastrodia elata	53.990
	SRR5643514	five period of Gastrodia elata	14.300
	SRR5643515	five period of Gastrodia elata	41.220
	SRR5643524	five period of Gastrodia elata	15.250
	SRR5643525	five period of Gastrodia elata	53.320
	SRR5643528	five period of Gastrodia elata	14.650
	SRR5643658	five period of Gastrodia elata	52.110
	SRR5643659	five period of Gastrodia elata	4.530
	SRR5643660	five period of Gastrodia elata	3.460
	SRR5643661	five period of Gastrodia elata	8.600
	SRR5643662	five period of Gastrodia elata	20.040
	SRR5643663	five period of Gastrodia elata	9.810
	SRR5643664	five period of Gastrodia elata	18.750
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	78.730
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	120.520
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	55.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	50.290
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	90.450
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.600
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	43.570
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	46.590
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.600
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	51.400
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	75.760
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	75.760
SRP279888	Gastro	Gastrodia elata tuber	3.21
	Juven	Juvenile tuber	20.67
	Mother_Gastro	Mother tuber of Gastrodia elata	7.14
	Mother_Juven	Mother tuber of Juvenile	8.95