Detail information of GWHGAAEX002674/evm.TU.scaffold_122.31
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 0 | FOG: PPR repeat |
| nr | gi|672134558|ref|XP_008790931.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Phoenix dactylifera] |
| Swissprot | tr|Q9FIX3|PP407_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g39710 |
| trEMBL | tr|F6HQE5|F6HQE5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56902.1} |
| TAIR | AT5G39710 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000123 | 1566760 | 1568946 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002674
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13041.5 | PPR_2 | 152 | 199 | 6.60E-09 |
| PF13041.5 | PPR_2 | 220 | 269 | 3.60E-17 |
| PF13041.5 | PPR_2 | 290 | 338 | 5.10E-17 |
| PF13812.5 | PPR_3 | 349 | 407 | 1.90E-13 |
| PF13041.5 | PPR_2 | 430 | 478 | 1.90E-18 |
| PF13041.5 | PPR_2 | 500 | 548 | 4.60E-18 |
| PF01535.19 | PPR | 592 | 617 | 0.018 |
| PF13041.5 | PPR_2 | 620 | 669 | 4.10E-12 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.240 |
| SRR2545915 | Juvenile tuber | 9.650 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.190 |
| SRR5643514 | five period of Gastrodia elata | 12.440 | |
| SRR5643515 | five period of Gastrodia elata | 10.270 | |
| SRR5643524 | five period of Gastrodia elata | 11.190 | |
| SRR5643525 | five period of Gastrodia elata | 12.000 | |
| SRR5643528 | five period of Gastrodia elata | 6.290 | |
| SRR5643658 | five period of Gastrodia elata | 9.360 | |
| SRR5643659 | five period of Gastrodia elata | 15.270 | |
| SRR5643660 | five period of Gastrodia elata | 20.820 | |
| SRR5643661 | five period of Gastrodia elata | 13.460 | |
| SRR5643662 | five period of Gastrodia elata | 15.550 | |
| SRR5643663 | five period of Gastrodia elata | 16.890 | |
| SRR5643664 | five period of Gastrodia elata | 16.210 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.430 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 10.910 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 11.890 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 13.780 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 15.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.750 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.900 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.870 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 10.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.440 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 11.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 11.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.00 |
| Juven | Juvenile tuber | 15.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 6.61 | |
| Mother_Juven | Mother tuber of Juvenile | 9.64 |