Detail information of GWHGAAEX002682/evm.TU.scaffold_122.52
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG2287 | 0 | Galactosyltransferases |
| nr | gi|743840012|ref|XP_010937161.1| | 0 | PREDICTED: beta-1,3-galactosyltransferase 15 [Elaeis guineensis] |
| Swissprot | tr|Q8L7F9|B3GTF_ARATH | 0 | Beta-1,3-galactosyltransferase 15 |
| trEMBL | tr|M0T3L0|M0T3L0_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P02620_001} |
| TAIR | AT1G26810 | 0 | galactosyltransferase1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000123 | 2398812 | 2419568 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002682
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module2 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00337.21 | Gal-bind_lectin | 165 | 357 | 4.30E-31 |
| PF01762.20 | Galactosyl_T | 401 | 585 | 1.50E-38 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K14413 | GALT1 | Metabolic pathways | map01100 |
| Various types of N-glycan biosynthesis | map00513 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006486 | Biological Process | protein glycosylation |
| GO:0008378 | Molecular Function | galactosyltransferase activity |
| GO:0030246 | Molecular Function | carbohydrate binding |
| GO:0016020 | Cellular Component | membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 10.290 |
| SRR2545915 | Juvenile tuber | 5.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 19.010 |
| SRR5643514 | five period of Gastrodia elata | 24.110 | |
| SRR5643515 | five period of Gastrodia elata | 14.750 | |
| SRR5643524 | five period of Gastrodia elata | 22.320 | |
| SRR5643525 | five period of Gastrodia elata | 21.360 | |
| SRR5643528 | five period of Gastrodia elata | 21.950 | |
| SRR5643658 | five period of Gastrodia elata | 20.760 | |
| SRR5643659 | five period of Gastrodia elata | 5.530 | |
| SRR5643660 | five period of Gastrodia elata | 4.630 | |
| SRR5643661 | five period of Gastrodia elata | 5.410 | |
| SRR5643662 | five period of Gastrodia elata | 4.290 | |
| SRR5643663 | five period of Gastrodia elata | 6.780 | |
| SRR5643664 | five period of Gastrodia elata | 5.770 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 22.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.310 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 28.700 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 16.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 33.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 23.410 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 18.660 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 21.760 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 29.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.520 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.82 |
| Juven | Juvenile tuber | 10.47 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 17.73 | |
| Mother_Juven | Mother tuber of Juvenile | 10.90 |