Gene detail

Detail information of GWHGAAEX002686/evm.TU.scaffold_122.55

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|159899614\|ref\|YP_001545861.1\|	2.00E-15	RNA-binding S1 domain-containing protein [Herpetosiphon aurantiacus DSM 785]
KOG	KOG1071	6.00E-77	Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt
nr	gi\|743840139\|ref\|XP_010937186.1\|	7.09E-126	PREDICTED: uncharacterized protein LOC105056625 [Elaeis guineensis]
Swissprot	tr\|P29344\|RR1_SPIOL	2.00E-10	30S ribosomal protein S1, chloroplastic (Precursor)
trEMBL	tr\|A0A059CP21\|A0A059CP21_EUCGR	1.00E-105	Elongation factor Ts {ECO:0000256\|RuleBase:RU000642}
TAIR	AT4G29060	6.00E-77	elongation factor Ts family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000123	2477972	2495260	+

Transcript Sequence
>GWHTAAEX002686 CGACTTCACTCATTGTTTCCGGCCGCCTCGTGGTTTCTCTTAAAGAGTTCAAATCATTATCGTATGGGTGAGGTCAAATAAGTAAAGTACAGAAAGGAATGCCTAGCTTCTAATATCTAAAGATTATTTGCAAACACCTAGCAGTAAATTGAGGATGACTCCACTGATCTCTGGTTCAGTAGGAAATATCAATCTTATTCCTGGAACTTCTTTCATACAATCAGAAAGAAGAGAATTTTTCAAACATTATGGTTTACACAATCATGCAAAGCGGGTATTCTTTACTAGAGGATATGATTTTTCACGACATTCATCACATTGGCCTAAGATATTTAGAATAGGCTTTAATCATTTTCATGGATTAAGAAGTCAAACGATGGTAGCTGTTGGGACTGATTCAATAATAGAGGATCAAAGTTTCACAGTTTCAGGAGAAGTTAAAGATGAAGCCGAAGGACTCTCTCCAATTTCTGTTGAGACTAGCAAAACTGCTTCCAGAAGTCCTCAAGTTACTCCTAGTGTAAAGATAAAGCGTCCAAGGCCAGTGAAAAAGAGTGAGATGCCTCCTGTGAAGGATGAAGAGCTGATACCTGGTGCTTCCTTTATTGGGAAAGTGAGATCAATTCAACCTTTTGGTGCTTTTATAGATTTTGGAGCTTTCACAGAAGGACTTGTTCATATTTCACAAATAAGCGATGAATTCGTTATAGATGTTTCATCTGCTATTTCTGTTGGGCAAGAGGTAAAAGTTAAGGTAGTACAAGCCAGTAAGGAAACTGGGAGAATATCTCTGAGCATGCGTGATAGTGATAATACCATCAAGAGGCAGCATAGAAAGGAAACACCTACCAGTGAAAGCAGTGATAAGCCTAAATCTGATAGGAAAAGATCTGCTAGATATAAGCGTGAAGATGGGGAAAAGGGCACCGTACTTGTGAGGGGCCAAATTTTGAATGGAACAGTGAAAAATTTAATAAGATCTGGTTCTTTTGTTTCACTACCAGATGGAGAGGAAGGGTTTCTACCTGTCTCCGAGGAATCTGAGGGTTATGAAAATTTAATGCGCAGCTCCTCTCTGCAAGTAGGCCAGGAAATTGAGGTACGGGTCTTGCGCATTTATAGAGGCCAGATTACTTTAACAAAGAAAAAAGAAGTAGATCTTGAAGAAATAAATAGGCAGCTTAATCAAGGTGTAACAGATGTAGATATAAATGCTTTTGAACTAGCTTTTCGTAAAAACAAGGATTTTGCTTCATTTTTGGATCAGATGGAAAGAGTGCGAGAGAAGAATTCTCATGGAAATGAAGAGAGTCAATGAATCTTCTGTAACCAGAAAAGGGGACAGTATCAGTGTTCTTTCTATCTAGTTCAGCCTTGGGTTCCAAGCTTGAAAATTCAGTCTCTGAGGTGCTTCATAAAAAATTCTAGATGAACAGATAAACCAGGATGCAATGCTTGAAAGCGAGTCACATCAGCGTTGGATTTCTAGTCCGCATCAGTAGTTCAACAGATTTGGCTTTGGAAAACTCTGTTGACTCTAATGCTCCATCAATTGATGAAGGGAATGAAAGTGATGTTCCCTGTTAGCCGGGTTCAGAGGGCAAACTCAAGTAATATTTCTATTGTGGTTGATGGGGTTGAAGTTGAAAGTAATATTTCTACCATTACAGTTTCAGTAGATGATGAAAAGTTTGATATAAGCTCTTAATTTTTTTTTTTTTTTTGTT

Network for GWHGAAEX002686

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00575.22	S1	146	216	3.30E-17
PF00575.22	S1	263	321	7.40E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.730
SRP064423	SRR2545915	Juvenile tuber	16.430
SRP108465	SRR5643513	five period of Gastrodia elata	8.000
	SRR5643514	five period of Gastrodia elata	5.870
	SRR5643515	five period of Gastrodia elata	7.850
	SRR5643524	five period of Gastrodia elata	7.570
	SRR5643525	five period of Gastrodia elata	9.320
	SRR5643528	five period of Gastrodia elata	6.530
	SRR5643658	five period of Gastrodia elata	8.310
	SRR5643659	five period of Gastrodia elata	10.470
	SRR5643660	five period of Gastrodia elata	9.990
	SRR5643661	five period of Gastrodia elata	11.950
	SRR5643662	five period of Gastrodia elata	17.050
	SRR5643663	five period of Gastrodia elata	13.100
	SRR5643664	five period of Gastrodia elata	11.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	13.850
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	7.370
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.120
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.670
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	12.730
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	13.090
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	12.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	11.920
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	9.770
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	12.210
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	10.200
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	10.200
SRP279888	Gastro	Gastrodia elata tuber	16.05
	Juven	Juvenile tuber	8.86
	Mother_Gastro	Mother tuber of Gastrodia elata	7.56
	Mother_Juven	Mother tuber of Juvenile	6.53