Detail information of GWHGAAEX002692/evm.TU.scaffold_122.65
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269837104|ref|YP_003319332.1| | 3.00E-146 | 4-alpha-glucanotransferase [Sphaerobacter thermophilus DSM 20745] |
| nr | gi|720092810|ref|XP_010245858.1| | 0 | PREDICTED: 4-alpha-glucanotransferase, chloroplastic/amyloplastic isoform X1 [Nelumbo nucifera] |
| Swissprot | tr|Q8LI30|DPE1_ORYSJ | 0 | 4-alpha-glucanotransferase DPE1, chloroplastic/amyloplastic (Precursor) |
| trEMBL | tr|M5WRQ1|M5WRQ1_PRUPE | 0 | 4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207} |
| TAIR | AT5G64860 | 0 | disproportionating enzyme |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000123 | 2869207 | 2900504 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002692
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02446.16 | Glyco_hydro_77 | 87 | 554 | 2.70E-143 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH77 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00705 | malQ | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Starch and sucrose metabolism | map00500 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005975 | Biological Process | carbohydrate metabolic process |
| GO:0004134 | Molecular Function | 4-alpha-glucanotransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 25.950 |
| SRR2545915 | Juvenile tuber | 48.070 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 46.960 |
| SRR5643514 | five period of Gastrodia elata | 50.660 | |
| SRR5643515 | five period of Gastrodia elata | 56.170 | |
| SRR5643524 | five period of Gastrodia elata | 46.770 | |
| SRR5643525 | five period of Gastrodia elata | 28.390 | |
| SRR5643528 | five period of Gastrodia elata | 28.790 | |
| SRR5643658 | five period of Gastrodia elata | 41.500 | |
| SRR5643659 | five period of Gastrodia elata | 46.960 | |
| SRR5643660 | five period of Gastrodia elata | 37.030 | |
| SRR5643661 | five period of Gastrodia elata | 44.680 | |
| SRR5643662 | five period of Gastrodia elata | 56.600 | |
| SRR5643663 | five period of Gastrodia elata | 67.010 | |
| SRR5643664 | five period of Gastrodia elata | 48.020 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 48.060 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 21.690 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 49.990 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 27.850 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 21.930 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 26.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 31.710 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 40.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 30.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 40.610 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 40.610 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 32.86 |
| Juven | Juvenile tuber | 22.80 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 8.63 | |
| Mother_Juven | Mother tuber of Juvenile | 10.96 |