Gene detail

Detail information of GWHGAAEX002693/evm.TU.scaffold_122.67

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2242	Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain
nr	gi\|672180140\|ref\|XP_008810251.1\|	PREDICTED: E3 ubiquitin-protein ligase RKP isoform X1 [Phoenix dactylifera]
Swissprot	tr\|Q9SIZ8\|RKP_ARATH	E3 ubiquitin-protein ligase RKP
trEMBL	tr\|F6H4A3\|F6H4A3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB47114.1}
TAIR	AT2G22020	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000123	3018139	3051461	+

Transcript Sequence
>GWHTAAEX002693 AGTTATAAAATTGTCGATCCCCGCCCGACTGCAAACCCTTCATTGCCTGTCGTCAAGTTCATGTCGGCACCAAACCCTAATTAGCTCGTCCGATACACATTTAAAGCGACGGAACTTTTTAAAATAAGCTCCACAATATCAACGTTCTTGATTCAGTAAGTTTACTCCCCGCTCTCCTAATCATGCAAATTTCAATTTTTTTGATATTGTTCAAGATATCGTATCCTCTCAATCTCTTAGTTCCCGGGTAATTCTTTTTGCAAGTCCCATGTTATCGAATAAGTAGTTCATACACAGTGTTTCACGAGGGGAATTATAAGATATAATTTTATATTATTTGTGGTAAGAGGTTGCAGCGAGTATCACATCCCATTTTGATTTTGGATTGAATTCGTTAAACTTAAGATTGTTGTATCAAGGGAGAAATGACAAAGGGGATTTAATTGCTTATTCATTATAACGTCGCTGCTTTCATCGGGAATCGATAAAATAGTGAATTTTGATCCCCGTGAACATGGTGGAAGAAGGAAATAAGAGTACCAGGTTCTCATCTGGACTGGCCTCTATATTGTTGGATGGTAGCCAGAAGGATGTTTCTCAGAGGTCTCATGTTGTCTCTTATTTTGATAACCTTGGGAACCAGTCTGTGGAACGGACAATTGAATACATTTTGGAACTTCCTCACAAGTCTATTTATCCAATTTCCGGATTAGTTGATGTTAGTTTCATTCGTGCTCTCTTATACGAGCAAATACTGAGATTGGGGGTTGGTAGGAACATGAATTTTGCTAACAGGGATGGGATTTCTGTTATTGATTGTGGTTTTGGTTCTAATATTGTTGCTATAGATAGTATGACTATCTGTGGGGAAATAAGAAAGATCAGGGAGCCATTGCTTATTGAAAGTTTAGCAGTGTTTAGTAGTGCTCGAGCTAATGCATGTGTGTGGAAGGGGAAGTGGATGTATGAAGTCACATTGGAAACTGCGGGAGTTCAGCAGCTGGGGTGGGCCACTGTTTCCTGCCCATTTACTGACCGTAAAGGTGTTGGAGATGCTGAAGACTCATATGCATTTGATGGAAGGAGGGTTAGCAAGTGGAACAAGTGCTCTAAAGCTTATGGTCAGCCGTGGGTTGTTGGAGATGTCATAGGGTGCTGCATTGATCTGAACAAAGATGTGATTTCCTTCTACAGAAATGGAGCGTCTTTAGGCGTGGCTTTTGATAGGATTTGTAAAGTGGGGCCTGGTATTGGTTATTATCCTGCACTTTCTCTTTCGGAAGGTGAAAGGTGTGAGTTGAATTTCGGTTCTCGGCCCTTTAAGTATCCTGTTGATGGCTTTCATCCAATTCAGGCTTCACCAAGTTCTGGAACTGCTTCGTTGTATTTGCTTCAATGCTTATCTAGGTTATTGGAAGTACAGAGAATGGCTAAATCTAATTCAGTGTACTTTGAGAAACTGAGAAGATTGAAGAGGTTTGCTCCTCTTGATGGGCTGTATCACCCTATTTCTCATGGTATTTGTGAGGAGCTCTATGCTATGATTTGTTTAAATCAAGTTTGCTGTGAATATATTTCTTGGGCAGGACTTTTGCCTTTCATGTTAGAAGTTTTTGGATCACAGGTGCCTCATGATTATGATAGCTTGGATCAGGTTATTGGACTTTTTTTTAATTTTCCTGGGCATGTTTCATTATTTCAACACCTCATCATGGCTCTTTCCTTCAGCTGCAAGACCTCCCCACTCATTCTAGTGGATTGCCCCTATTCTGGGTCATACCCTTACCTGGCTTTGGCTTGCCATATGCTCAGGCGCGAGGATATGATGATTTTATGGTGGCAATCACCTGATTTTGAATTTTCATTGGAAGGTTTTTTTTCAATAAAGGGCCCCAACAAGCAGGATCTTCACTTATTGATACCATCTGTTTGGTGGCCTGGGTCATCAGAGGAAATTGGTTCTGAAAGAAGTATGAATCTAACAACAACAACATTATCTAAAGCCATCAGTAAGATAGAGAAGATGCACCGAGAACTTTGCTGTATGATCATACGATTCATACCTCCCACAACACCAAGACAATTACCTGGATCTGTGTTCAGAACATTTCTACAGAACTTGATATTGAAAGTGAAGGGTGCAGAACATAAGATGTCCTTTTCTGAAGCTTCTAGTGATTCTGCACTTATTTCTTTGTACACAGTGATCCTCTTTTTCTTGTCTGAAGGTTTTTCTATAGATGGCATATATGACTTGATAGGCTTCCCTGCAAATGCTGAAGCTGGAGGAGGTTTTCTTCACAGAGGTGGAAAGAGAAATTTCCCTGCAGAGCTGTTTCTAAATGCTGATCCACATCGAAGCTGGATCCCTAGGATTGGAGGCTCAATTAACCATTTGTTCAAGTCTCATATTGTCAATGCCGAGGAAAAAGTTGTGTTGTGGGAAGAAGGGTGTATGGATGATCATGATACAAGAATAACACATTCCACTAGAAAAAAACCTTGTTGTTGTTCGTCATCTGATTTTGATACATTTATATTGTTAAAAGAAAATGTTAAAATCCCAGGTATAACTTCAAAGGGTACCTGTACTTCTATCACAGAGAGATCTGTTACTTCAGAGTGTGCTGCCGACAGTTTGAATGATGGTATTGTGGATAAACCTAGTTCAAGTGACCGAACTGAGTCAGATATGGTGTACCAGACTTTGCAGCATATTGGGAGTGAAACAATGGTCAATTCATTGTCTTTAGATGTTTTACGAGAGGAGGAATTACTGGATATCATGCTCTTTTTGTATCATTTGGGCATTGCACCTAAATTCAGGCAGGCCTTCTACTACATGTCTCATCAATCACATTCAATTTCTCTTTTAGATGACACCGACAAACAAATAAGAGAAAATTCTTGCATTGAACAATTGAAGAGATTAAAAGAAGTTCGAAAAAGTTATCATGAAGAGTTAGTTGATTGTGTCAGACAGTGCACATGGTATCGAATTTGTTTTTTTTCTCGGTGGAAGCAAAGAGGAATGTATGCAGCGTGTGCATGGGTCGTGGAGTTGCTTTTGGTTCTCAGCAATACTGAATCCATCTTTCTTTATATTCCAGAATTTTATTTGGAAGCACTGGTTGACTGTTTTCATGCATTGCGGAAGAGTGATCCTCCGTATGTTTCTTCTGCAATTTTTATCAAGCAAGGTCTTGCTTCTTTTGTTACCTTTGTGGTCAAACACTTCAATGATCCACGCATATTGAGTGCTGATGTAAAAGATCTTCTTATCCAATCTATATCAGTGTTAGTACAGTACAACGACTACATGGTTGCTTTTGAGTCTAACAAAGAAGCTGTGAAGAGTATGCCCAGGGCGTTGCTTTTGGCGTTTGACAGCAAGTCTTGGATTCCAGTCACCAATGTACTTCTTCGGTTGTGTAGGGGTACCGGATTTGGTTCCTCAAAACATGTGGACTCATCTTCTTCAGTTCTTTTTCAGGTGCTACTTCGTGAGGTCTGCATCTGTGATGAAGGGCTATTCTTTTCATTCCTCAATCGACTTTTCAATACCCTTAGCTGGACTATGACAGAATTTTCTGTTTCAGTTTGCGAGATGCAAGAGAGCTATCAGATTGGAGACTTGCAGCAAAGAAAATGCACTGTTGTTTTTGAACTTTCATGCAATCTTGCTAGACTGTTGGAGTTCTATACTCGGGAGATCCCTGAAGCATTTATTCAAGGGCCTGATATGAATCTTAGAAGGCTAACTGAGTTGATTATTTTTATGTTGAACCACATGATCTCAGTTGCAGATACTGAATTTTTTGACAAGCGACCCGGACAGTTTCATGAGAAAACAAACCGATATATGATAATGGCGCCCCTTGTGGGTATCATCCTAAATCTGGTTGATGCAAGCGCTGCGTCAAAGTGCATAGAAATGCTTGATATTGTTGAAGTCTTTGCAAGCATGGGCGGTTCTCCAACTGTTCATTGTGGATTCCAGTACCTACTCAATTATAACTGGGGCAATGTGCTGAGAGGGGAGGAGTCCCTCTCTAGGCTGGCGCCGCTTGACGAGTTCTCAAGCAGCTTGAGGAGAAGGATGATGGTATTGGAAGGAACGGCAGGGAGAGAGGAGGGTAGGGAGGATAACGACAGGCTGTGCTGCATCTGCTGTGCTTCCGACTTGGATGCACAGTTTGAGCCCTGCGGCCACCGCTCTTGCCTTGGCTGCATCACGAGGCACCTCCTCAACAGCCAGCGATGCTTCTTTTGCAATGCCGCAGTCACAAGAGTTGTTGCCATTGCAGCAGATTATTAGTGTCATGCCTTTTTTGATAATCTTTTTTTTTTTTT

Network for GWHGAAEX002693

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00622.27	SPRY	148	266	1.70E-24

Protein Sequence

>GWHPAAEX002693
MVEEGNKSTRFSSGLASILLDGSQKDVSQRSHVVSYFDNLGNQSVERTIEYILELPHKSIYPISGLVDVSFIRALLYEQILRLGVGRNMNFANRDGISVIDCGFGSNIVAIDSMTICGEIRKIREPLLIESLAVFSSARANACVWKGKWMYEVTLETAGVQQLGWATVSCPFTDRKGVGDAEDSYAFDGRRVSKWNKCSKAYGQPWVVGDVIGCCIDLNKDVISFYRNGASLGVAFDRICKVGPGIGYYPALSLSEGERCELNFGSRPFKYPVDGFHPIQASPSSGTASLYLLQCLSRLLEVQRMAKSNSVYFEKLRRLKRFAPLDGLYHPISHGICEELYAMICLNQVCCEYISWAGLLPFMLEVFGSQVPHDYDSLDQVIGLFFNFPGHVSLFQHLIMALSFSCKTSPLILVDCPYSGSYPYLALACHMLRREDMMILWWQSPDFEFSLEGFFSIKGPNKQDLHLLIPSVWWPGSSEEIGSERSMNLTTTTLSKAISKIEKMHRELCCMIIRFIPPTTPRQLPGSVFRTFLQNLILKVKGAEHKMSFSEASSDSALISLYTVILFFLSEGFSIDGIYDLIGFPANAEAGGGFLHRGGKRNFPAELFLNADPHRSWIPRIGGSINHLFKSHIVNAEEKVVLWEEGCMDDHDTRITHSTRKKPCCCSSSDFDTFILLKENVKIPGITSKGTCTSITERSVTSECAADSLNDGIVDKPSSSDRTESDMVYQTLQHIGSETMVNSLSLDVLREEELLDIMLFLYHLGIAPKFRQAFYYMSHQSHSISLLDDTDKQIRENSCIEQLKRLKEVRKSYHEELVDCVRQCTWYRICFFSRWKQRGMYAACAWVVELLLVLSNTESIFLYIPEFYLEALVDCFHALRKSDPPYVSSAIFIKQGLASFVTFVVKHFNDPRILSADVKDLLIQSISVLVQYNDYMVAFESNKEAVKSMPRALLLAFDSKSWIPVTNVLLRLCRGTGFGSSKHVDSSSSVLFQVLLREVCICDEGLFFSFLNRLFNTLSWTMTEFSVSVCEMQESYQIGDLQQRKCTVVFELSCNLARLLEFYTREIPEAFIQGPDMNLRRLTELIIFMLNHMISVADTEFFDKRPGQFHEKTNRYMIMAPLVGIILNLVDASAASKCIEMLDIVEVFASMGGSPTVHCGFQYLLNYNWGNVLRGEESLSRLAPLDEFSSSLRRRMMVLEGTAGREEGREDNDRLCCICCASDLDAQFEPCGHRSCLGCITRHLLNSQRCFFCNAAVTRVVAIAADY

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	29.420
SRP064423	SRR2545915	Juvenile tuber	28.190
SRP108465	SRR5643513	five period of Gastrodia elata	22.340
	SRR5643514	five period of Gastrodia elata	20.910
	SRR5643515	five period of Gastrodia elata	21.060
	SRR5643524	five period of Gastrodia elata	21.470
	SRR5643525	five period of Gastrodia elata	18.070
	SRR5643528	five period of Gastrodia elata	14.430
	SRR5643658	five period of Gastrodia elata	16.700
	SRR5643659	five period of Gastrodia elata	26.140
	SRR5643660	five period of Gastrodia elata	30.420
	SRR5643661	five period of Gastrodia elata	25.940
	SRR5643662	five period of Gastrodia elata	29.040
	SRR5643663	five period of Gastrodia elata	28.900
	SRR5643664	five period of Gastrodia elata	30.580
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	27.470
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.250
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.670
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.780
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	31.530
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	35.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	29.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	21.870
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	26.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.490
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.490
SRP279888	Gastro	Gastrodia elata tuber	40.41
	Juven	Juvenile tuber	39.03
	Mother_Gastro	Mother tuber of Gastrodia elata	31.37
	Mother_Juven	Mother tuber of Juvenile	40.43