Detail information of GWHGAAEX002695/evm.TU.scaffold_122.70
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|392396660|ref|YP_006433261.1| | 1.00E-09 | sterol desaturase [Flexibacter litoralis DSM 6794] |
| KOG | KOG0874 | 1.00E-124 | Sphingolipid hydroxylase |
| nr | gi|743839652|ref|XP_010937060.1| | 3.67E-162 | PREDICTED: sphinganine C(4)-monooxygenase 1-like [Elaeis guineensis] |
| Swissprot | tr|Q9AST3|SBH2_ARATH | 4.00E-125 | Sphinganine C(4)-monooxygenase 2 |
| trEMBL | tr|M0SML4|M0SML4_MUSAM | 9.00E-158 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P09970_001} |
| TAIR | AT1G14290 | 1.00E-124 | sphingoid base hydroxylase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000123 | 3121076 | 3143260 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002695
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04116.12 | FA_hydroxylase | 101 | 236 | 4.20E-26 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04713 | SUR2 | Metabolic pathways | map01100 |
| Sphingolipid metabolism | map00600 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0008610 | Biological Process | lipid biosynthetic process |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0016491 | Molecular Function | oxidoreductase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 23.790 |
| SRR2545915 | Juvenile tuber | 25.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 32.910 |
| SRR5643514 | five period of Gastrodia elata | 29.520 | |
| SRR5643515 | five period of Gastrodia elata | 30.070 | |
| SRR5643524 | five period of Gastrodia elata | 27.600 | |
| SRR5643525 | five period of Gastrodia elata | 50.980 | |
| SRR5643528 | five period of Gastrodia elata | 66.910 | |
| SRR5643658 | five period of Gastrodia elata | 41.770 | |
| SRR5643659 | five period of Gastrodia elata | 30.020 | |
| SRR5643660 | five period of Gastrodia elata | 26.120 | |
| SRR5643661 | five period of Gastrodia elata | 31.410 | |
| SRR5643662 | five period of Gastrodia elata | 26.200 | |
| SRR5643663 | five period of Gastrodia elata | 29.600 | |
| SRR5643664 | five period of Gastrodia elata | 23.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 24.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 25.410 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 30.740 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 23.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 20.460 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 18.390 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 24.820 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 27.120 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 32.440 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 26.180 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 33.810 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 33.810 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 23.45 |
| Juven | Juvenile tuber | 18.15 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 45.12 | |
| Mother_Juven | Mother tuber of Juvenile | 16.08 |