Detail information of GWHGAAEX002699/evm.TU.scaffold_123.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|209964184|ref|YP_002297099.1| | 6.00E-06 | hypothetical protein RC1_0856 [Rhodospirillum centenum SW] |
| KOG | KOG1541 | 3.00E-145 | Predicted protein carboxyl methylase |
| nr | gi|695028355|ref|XP_009401552.1| | 7.01E-176 | PREDICTED: Williams-Beuren syndrome chromosomal region 22 protein homolog [Musa acuminata subsp. malaccensis] |
| trEMBL | tr|M0T0M1|M0T0M1_MUSAM | 3.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr5P21960_001} |
| TAIR | AT5G57280 | 3.00E-145 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000121 | 22056 | 44461 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002699
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08241.11 | Methyltransf_11 | 55 | 157 | 2.40E-08 |
| PF12589.7 | WBS_methylT | 201 | 294 | 8.20E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0070476 | Biological Process | rRNA (guanine-N7)-methylation |
| GO:0016435 | Molecular Function | rRNA (guanine) methyltransferase activity |
| GO:0008168 | Molecular Function | methyltransferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 50.110 |
| SRR2545915 | Juvenile tuber | 47.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 36.810 |
| SRR5643514 | five period of Gastrodia elata | 34.020 | |
| SRR5643515 | five period of Gastrodia elata | 36.960 | |
| SRR5643524 | five period of Gastrodia elata | 35.300 | |
| SRR5643525 | five period of Gastrodia elata | 44.660 | |
| SRR5643528 | five period of Gastrodia elata | 42.520 | |
| SRR5643658 | five period of Gastrodia elata | 44.760 | |
| SRR5643659 | five period of Gastrodia elata | 42.950 | |
| SRR5643660 | five period of Gastrodia elata | 45.400 | |
| SRR5643661 | five period of Gastrodia elata | 43.020 | |
| SRR5643662 | five period of Gastrodia elata | 40.580 | |
| SRR5643663 | five period of Gastrodia elata | 41.510 | |
| SRR5643664 | five period of Gastrodia elata | 34.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 32.860 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 38.000 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 35.940 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 35.140 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 37.690 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 40.230 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 33.920 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 32.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 38.290 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 40.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 44.740 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 44.740 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 38.80 |
| Juven | Juvenile tuber | 34.14 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 42.42 | |
| Mother_Juven | Mother tuber of Juvenile | 42.42 |