Detail information of GWHGAAEX002700/evm.TU.scaffold_123.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|460394533|ref|XP_004242857.1|6.15E-31PREDICTED: 60S acidic ribosomal protein P3-like [Solanum lycopersicum]
Swissprottr|O24413|RLA3_MAIZE4.00E-3260S acidic ribosomal protein P3
trEMBLtr|K4CC52|K4CC52_SOLLC2.00E-31Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc07g009330.2.1}
TAIRAT4G258901.00E-2660S acidic ribosomal protein family

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012193018102711+
Transcript Sequence

Network for GWHGAAEX002700

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00428.18Ribosomal_60s771193.80E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02942RP-LP1, RPLP1 Ribosome map03010

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms84.050
SRR2545915Juvenile tuber106.760
SRP108465SRR5643513five period of Gastrodia elata452.340
SRR5643514five period of Gastrodia elata548.010
SRR5643515five period of Gastrodia elata472.510
SRR5643524five period of Gastrodia elata551.340
SRR5643525five period of Gastrodia elata298.390
SRR5643528five period of Gastrodia elata298.090
SRR5643658five period of Gastrodia elata226.960
SRR5643659five period of Gastrodia elata373.320
SRR5643660five period of Gastrodia elata370.020
SRR5643661five period of Gastrodia elata443.660
SRR5643662five period of Gastrodia elata310.790
SRR5643663five period of Gastrodia elata335.240
SRR5643664five period of Gastrodia elata324.790
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1277.260
SRR6049655Rhizomagastrodiae_C368-T10_good_1303.700
SRR6049656Rhizomagastrodiae_C368-T07_good_1314.240
SRR6049657Rhizomagastrodiae_C368-T07_good_1251.950
SRR6049658Rhizomagastrodiae_C368-T04_good_1182.690
SRR6049659Rhizomagastrodiae_C368-T04_good_1153.380
SRR6049660Rhizomagastrodiae_C368-T01_good_1230.190
SRR6049661Rhizomagastrodiae_C368-T04_good_1205.720
SRR6049662Rhizomagastrodiae_C368-T01_good_1337.360
SRR6049663Rhizomagastrodiae_C368-T01_good_1306.660
SRR6049664Rhizomagastrodiae_C368-T10_good_1534.600
SRR6049665Rhizomagastrodiae_C368-T10_good_1534.600
SRP279888GastroGastrodia elata tuber 207.81
JuvenJuvenile tuber296.55
Mother_GastroMother tuber of Gastrodia elata 159.76
Mother_JuvenMother tuber of Juvenile 162.87