Gene detail

Detail information of GWHGAAEX002701/evm.TU.scaffold_123.4

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	6.00E-134	FOG: PPR repeat
nr	gi\|743869304\|ref\|XP_010905782.1\|	0	PREDICTED: pentatricopeptide repeat-containing protein At1g76280 isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9SGQ6\|PP126_ARATH	1.00E-122	Pentatricopeptide repeat-containing protein At1g76280
trEMBL	tr\|M5X5C4\|M5X5C4_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ20691.1}
TAIR	AT1G76280	6.00E-134	Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000121	193020	253543	-

Transcript Sequence
>GWHTAAEX002701 ATAACACTGTTATCTTAATAACATGCTATCTTAATAACTTTTCAAATAACACTGAACCAAACAGCCCCTTAATAGGATGTGCTTCACAGGTGCACTAGAGAAACCATCAGCTCAAATTCACATCCCAAAAAAGAAGGGCCTGAGATTTTAGAAGTTTTATGAGCCTGATCAATATAAAATCTACTGAGCTCTCTCACTGACTCATTCGTTTTCTATAGGAAGCTCCAAAATATGTACAGATACATATCAAGGGCAAATTGTAGGTACAGGACTTTTGGAAAAATTGCAAGAGATGAAAGAAAGAACGACCATGAAAGAGTGCAGTCATCTCAAGCTTTCTCTGATTTAAGTGATTTCAGCCAGATTGGGAGGACAAGCAAATCAGGAACTCGGGATGCACAAATTCAAATAATTAACACACTTCGTTTGCAGCAGATAAACAGAGCACAAGAGATGCTAGTTGATCTAAGTTCCATGAATAATTCCTTACATGCTGATGATTTTGATTATATATTGGAATATTGTGCTCGGACACCTGATCCATTGTTTGTTATGAAGGCATGGGAAATTATGGTGAAAACTGAAATGGATATGAAGAAGAAATCTTATAGATGCATTATCCAGGCTCTCAGTAAGGGAGGGTACTTTAAAGAGGCATTTGAATGGATTAGTTCTCTTGAGGAAAGTGATCATTTCCATGCTGGTTTACCTTTATGCAATATTGTTCTAAGGGAATGCATTAATAAGCAAAGTTTAATTGATGTTGATCACTGCTTGGAGCTGATGAACAACCAACTACTAGGAAGGTCTGAGATAACCTATTGGGAGCTTCTGAAGCATTCTGTTCTTCAGAAGAGTTTGTCTGCAGTTCATGGTGCATGGAAGGATTGTATTAAGCATTATAACCCGAGCATTATTACTCTTAGAAAATTTATCTGGTCTTTGACAAGATTGCATGATCTAGAATCAGCCTATAATGTATTACAATACATGGTTTCCCTTGTTAAAAGTGGTTGTACCTCTCTCAGAAAATCTGCTGCAGGAAGATATCAATCATCACGCTTAGATATCCCTATACCACCTTGCACATTATCAGTTGAGAGTTTTAACTTGAAGGCAAATCTACCCTTGCAAGATATGCTTGATGCCAAGTTGATCAGGGAAGAAAATGATTTTGGTTCATTAGATATATGTGGTAGAGCACACTGCTCAAGAAACATCACTAACGATGACCTTGTAGCAAATGATAGTACTGCAGATGCATGCACTGTCCCTTCTTCATCTATTTTCTCTGGGAATTATACAAGCAATTTTTTTGGCGAGACAAAGGGAAATGGTACATGTTCTCAGATATCTCATTCCATTGCTACAGGGATTAACTGTCAACATCTCTTTGTTAAGAATGGGGAAATGATAGAACATGCAACAAACTGCTTACGGAATAAAACATTTGACTATAGTATACCAAAAGAAGCAGAATTTAGACCTGTTGTCAATATTTTGAGATGGTCATTCAATGACGTGATTCATAACTGTGGCAAGTATGGAACTTGGGAATTGGCCGAGTACTTGATCCTTCAGATGCAAACGCTTGGAGTAGAACCATCGCCTCATACGTTTGATGGCCTTATTAAAGCTGCCACTTATGGAAGGGGACTGGCTTGTGGCTTAAAATTGATGGATTCAATGGAGAGAAGGGGCATGAAGGCTTACAACGATACTCTTGCATTCCTCTCTGTTGAACACAGCAAGAAGTTGGAGTTGAGTAAGGCAGAGAGTTTACTGGAAATGATCTCTAATAACCTTCCGAAATACATACATTCTTTTAATGCATTTTTGGTCGCATGCGATATCATGGATGTACCAGAACGTGCACTTTATATTTTAGCTAAACTAAAGCGTTTGAACATGAGACCAAATATAAGAACATTTGAGGTTTTATTTTCACTGTTTGGTACTGTCAATGCCCCTTATGAGAGAGGAAATATGCCTTCACATATGCATGTAGCAGAGAGGATAAGACACATAGAGATGGGCATGAGGAGAAGTGGAGTTCAACACAGCTATACGTCAATGAAAAATCTGATAAGAGCTCTTGGAATGGAAGGCATGATAACGGAGATGCTCCAGCGTCTAGAGACGGCAGAAAAAATGCTGTTAGAGATGCATCCTCGTCAAATAACTGATATGTACAACATTATTCTCCATTCACTTGTAGAAGCTGGGCATGCTTTAACTGCAATAGAATACTTTCAAGGATTGAGATCTTATGGATTCCTCGCTGATTCTGCTACATATCACATTATGCTAGAATGTTGTGCCTTAATAGCTTGTTTCAGGTCGGCTCTTGCGTTGATGTCTTTGATGCTTCGTGACGGTTTCTTTCCACATATAATGGCTTACACTGCAGTCGTTAAGGTTTTGCTAGCAAACAATGATTTCCAGATGGCATTGGAAATTCTTAACCAAGCTAGTTCTGATGAAATACAACTTGATGTCCATCTTTTCAACGAAATCCTTCAGCAAGCATGCACAAAGATATCATCTAGAGAACCAGAAGATGAATATGCAGAGGGGCTAATTAATGTGATAGAAAATATCATCGAGAAAATGCACCATGACAACATCAAACCCGATCCTTCAACCTGTGCGCACACGTTCTGCTCTTATGCAGAACTTGGCTTATACAGTACGGCAGTGGAAGCGCTGAGAGTGCTGAGCTTGCGCATGATTTCTGAGAACGGCGTAGAGCTTGAAGAAAGAAGGAACAGATTTGAAGAACTCGTATGCAGCGAAGATCCATATGTTGAATCCCATATAATCTCCATTTTTGAAGATGGCAAGGAGTATCTTGCCATTGGGTTGCTCAACCTAAGATGGTGCACTTTTGTAGCAGGCCACCCCTTATCGTGGTCTCCTGAAGAAAGCTTGTGGTCTCAAAGGCTTTCTACTTCATCAAATTTCTCTTCTAAATAGCTTTTTATAGTGTCTTAAAAACGCTTATCTTCAATTTTGCAATGGAGGGTGTATCATAGTCGAATTCCAGTTCAATTGAAGATATCAGCACCTTAAAATTTTCTCATGACACTAAATTTTTTGGGGAAGTTTTGCAAATTCCTTAATGTTCCAACTATTTTTATTAGCTGTTTTGTGTGCCATTTATCCAGTGTTTCGTAGTAAAACCCAGCGTTAGTATTAATTAAAACCAATGGGGACAAATGGATAATGCAAAGCATACTGATATATAAATGAAAGCAATATGGTTCATTATGGGATGTGTTCTCTTATAAATGGGCTATTTTGTGTATTTTGAAACCTCCTAATCATTGCAATTTCATGTAGCTATATTCTTGAAGAAAAATAAAGTTGAGTAAGGTGGATGTATAGTTACTGTTGCTGGTGCTGTTGTGTGCATTGTTAGTATTTTTTAA

Network for GWHGAAEX002701

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01535.19	PPR	125	152	0.091
PF13812.5	PPR_3	529	575	0.0071

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	30.340
SRP064423	SRR2545915	Juvenile tuber	24.910
SRP108465	SRR5643513	five period of Gastrodia elata	17.460
	SRR5643514	five period of Gastrodia elata	21.280
	SRR5643515	five period of Gastrodia elata	19.190
	SRR5643524	five period of Gastrodia elata	20.340
	SRR5643525	five period of Gastrodia elata	21.220
	SRR5643528	five period of Gastrodia elata	23.110
	SRR5643658	five period of Gastrodia elata	20.280
	SRR5643659	five period of Gastrodia elata	19.170
	SRR5643660	five period of Gastrodia elata	23.650
	SRR5643661	five period of Gastrodia elata	18.930
	SRR5643662	five period of Gastrodia elata	20.910
	SRR5643663	five period of Gastrodia elata	25.810
	SRR5643664	five period of Gastrodia elata	21.340
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	29.770
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	17.360
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.530
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	32.900
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	51.740
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	51.940
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	35.920
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	51.260
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	29.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	34.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	24.340
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	24.340
SRP279888	Gastro	Gastrodia elata tuber	42.76
	Juven	Juvenile tuber	40.51
	Mother_Gastro	Mother tuber of Gastrodia elata	53.08
	Mother_Juven	Mother tuber of Juvenile	40.85