Detail information of GWHGAAEX002706/evm.TU.scaffold_123.9


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|743822223|ref|XP_010932222.1|9.53E-43PREDICTED: uncharacterized protein LOC105052935 [Elaeis guineensis]
trEMBLtr|M0TFH5|M0TFH5_MUSAM2.00E-32Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P07350_001}
TAIRAT2G016408.00E-30Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000121363170408061+
Transcript Sequence

Network for GWHGAAEX002706

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF15341.5SLX9141271.00E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0000462Biological Processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0030686Cellular Component90S preribosome
GO:0030688Cellular Componentpreribosome, small subunit precursor
GO:0005730Cellular Componentnucleolus

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms44.780
SRR2545915Juvenile tuber39.070
SRP108465SRR5643513five period of Gastrodia elata27.470
SRR5643514five period of Gastrodia elata30.770
SRR5643515five period of Gastrodia elata26.800
SRR5643524five period of Gastrodia elata29.440
SRR5643525five period of Gastrodia elata28.570
SRR5643528five period of Gastrodia elata28.750
SRR5643658five period of Gastrodia elata25.160
SRR5643659five period of Gastrodia elata24.820
SRR5643660five period of Gastrodia elata27.260
SRR5643661five period of Gastrodia elata23.760
SRR5643662five period of Gastrodia elata18.580
SRR5643663five period of Gastrodia elata21.810
SRR5643664five period of Gastrodia elata21.440
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.480
SRR6049655Rhizomagastrodiae_C368-T10_good_135.620
SRR6049656Rhizomagastrodiae_C368-T07_good_125.900
SRR6049657Rhizomagastrodiae_C368-T07_good_133.050
SRR6049658Rhizomagastrodiae_C368-T04_good_124.220
SRR6049659Rhizomagastrodiae_C368-T04_good_129.940
SRR6049660Rhizomagastrodiae_C368-T01_good_126.090
SRR6049661Rhizomagastrodiae_C368-T04_good_123.750
SRR6049662Rhizomagastrodiae_C368-T01_good_121.410
SRR6049663Rhizomagastrodiae_C368-T01_good_125.150
SRR6049664Rhizomagastrodiae_C368-T10_good_128.270
SRR6049665Rhizomagastrodiae_C368-T10_good_128.270
SRP279888GastroGastrodia elata tuber 27.93
JuvenJuvenile tuber35.25
Mother_GastroMother tuber of Gastrodia elata 22.79
Mother_JuvenMother tuber of Juvenile 27.43