Gene detail

Detail information of GWHGAAEX002710/evm.TU.scaffold_123.17

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1356	8.00E-157	Putative transcription factor 5qNCA, contains JmjC domain
nr	gi\|702433059\|ref\|XP_010069331.1\|	0	PREDICTED: lysine-specific demethylase JMJ25-like [Eucalyptus grandis]
Swissprot	tr\|Q9SSE9\|JMJ25_ARATH	4.00E-83	Lysine-specific demethylase JMJ25
trEMBL	tr\|M0SLA2\|M0SLA2_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr4P05350_001}
TAIR	AT1G62310	8.00E-157	transcription factor jumonji (jmjC) domain-containing protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000121	633299	673119	-

Transcript Sequence
>GWHTAAEX002710 AGTAATATTATGTATGGATAATATGCTCTGGCCCATATTTTCGTAGTGCACGTCGAACTGCTCTCGGCCTCCTCTTCCGCTCATCCTTCGGCTCAAGGAAACTGTTCCCTCAACTTTGCGATAGTGTCTCCTGCGACACTTCTTTTTCTCATTCTTCGGGTTTAGATGGTGGGATTTCAGTAGGGAAATGGAAGAGGAAAGATTAGAGTTTCTGAAGAAGCCGGAACTGATGCCAGAAGAAGAAGCATGGGATGATGATATTTCATTTTCATTAAGAAAGCATAGTATAAAAGCTGACTCTAAGTCTGAGAAAATACAAGATCAGAAGTTTGATGGAGTATCGGATGTTGGAGTAGTGAGTCCGAAAAGGGAGAAGAAAAAGAAAAGAAAGACTAGTTTAAACTTTGAGGATAAGCTGAATCATGTGATGAGTTCTTCATTTGATAAAGAAGATTCAGACTGTTGGATCGTTGCTTCAACTGGGAACCTGAAAGGAAAGGCTAAAGAGTTTGAGAAAAGGAAATATCAGAATGGGGACAAATTTGAAACAGGGATTGCATCATTTGTGAAGAATCGGAAGAGAAAGGCTCTTCCTATATATCTTGATTATGAGGAGCAGGGTGGTTCAAAGAGAAAGCTACTTACTGGTGACGATGCCCTAATGTGCCATCAATGTCAAAGAAATGACAAGGGAGCTGTTGTGCGATGCATGGCTTGCAATAGAAAACGATATTGCTATCCCTGTATTAACCGATGGTATCCACAGCTAGCACCCGATGACTTCGCGATTAAATGCCCCTTTTGTCGATTCAATTGCAATTGTAAATCATGCTTGCGCATGAGAGGAATTTCAGCACCTCCTATAAGAGAGATTCCAAAGGAGGAAAAAAAACGATACCTTTTATATGTACTACGTCTACTGCTTCCATGGTTCCAAGAACTACGAATAGAACAGCAATTGGAAAAGGAAGTTGAGGCTCGGGCAACTGGTCTTGCATTGGATCAATTAAAGCTACAACAAGCTCCTTGTGCAAAAGATGAACGCATATACTGCAATTACTGCAGCACATCAATTGCAGATTTTCATAGAAACTGTCCAAAGTGTGCCTATGACCTATGCTTATCTTGCTGTCGAGAGTTACGTGAAGGCTGTTTGCCTGGGCACAATGGACAAAAAGAAATAAAATCTAATATCCCTGAGGGTCCTTTGACTGCACTTACGCATTGGAGAGCAAATGCTGATGGTAGTATTCCTTGTCCACCAGAACAAGTGGGTGGATGCGGTAATTCTCTTTTGCAACTCGAGTATATTCTTCAGGAAGATATGCTGCTTGAGTTAGAAGAAAATGCTAGAACCATTATTGAACGTGAAAGCAGGGAATTTGCCAAATCACATGAAAACTCTGGAAGTTGCACCTGTTTGTGCGTGTCAGTGAAGACTGATATTGCTAATGATGAATTGAGAAAAGCAGCATCAAGAGAAGCCATCGAAGATAATTTCTTGTACAGTCCAAGCTCTAGGCATATTCAAGAAGGTGAACTTGAGCATTTCCAGAAGCATTGGGCTAAAGGTGAACCAGTGATTGTTCGTGATGTACTTGATTTATCATCTGGATTGAGTTGGGAACCAATGGTCATGTGGCGTGCACTGCGGGAGAAGAAAGTGAGAAAGGTTAAATCTGAAAATTTTGAAGTAAAGGCGATTGATTGTCTTGATTGGTTTGAGGTAGAGATAAATATTCATATGTTTTTTCATGGATATTCTGTTGGAAGATTTTGTAGCGATGGTTGGCCTGAGATGCTTAAACTTAAAGATTGGCCTCCATCTAGCTCTTTTGAGGAGCGGCTACCACGTCATGGTGCTGAGTTCGTTTCCGCTTTACCATTTCAAGAATATACAAATCCTCGGAATGGTCCTCTTAATATTGCTGTGATGTTTCCCCGTGACTTTTTGAAGCCCGACCTTGGCCCCAAGACGTACATAGCTTATGGATTTGCTGAAGAGTTGGGATGTGGGGATTCTGTCACTAAGCTTCATTGTGATATGTCTGATGCGGTAAATGTATTAACACACACTGCTGAAGTTCCTCTTACAAAGGCTCAGCTTTCTAAAATAAATGAATTAAAAGAGGGAAAACGAAATGGGGCTGCTGTATGCAAGGACCAACAGGCGCTTGCTGATGAGGCTAAATCTTACTATGATACTGAAAGAATTGATCCTGGGATTAATGCAATTGGTAATAATACTATATCGGTGCTTGATGGAATTAATTCTGTTTCCCTTTTTAATGGAAAGTGCTGTGATTCTACCTTCCCATCTGATGCAACTCTTGAGAAACAAAATTTGCGTGATGTCAAAAATGAGCACAGTGAATATTCTGCTTCAAATGTTGCTCTGGCTGTATGTTCTGGAGAGCCGTTAGCCGATAAAACTTTGAATGTGGGAGATGCCTTAAGTTTAGGATTAAGTACAAGTGAATGTTATGGAACGTCAAGTTCAATAGCTGAAGAAAATACTCAAAGTATTGAGAAACAAATCTCTCGGAAAAGGGGCAGGCCGCGGGGATCCTCAAGAAATCTCAGAATCACAAACAGTAAGAAGGAAAGGGGATGCCGTATTCTTAATGTCTCTCAGACATCCACAAATGAGAAGATAGAAAGACCAGCAAAACTAATGGAAACAGCTGATTCTTCAAACGCTGTTGTTACAAAAGGGATGGACACAGAGGAAGGTGGTGCTTTATGGGATATCTTCCGAAGAGAAGATGTCCCAAAATTAGAAGAGTATCTTAGAAAACACTTCTGTGAATTCAATCATTTTTCAAATTCTCCTGTGCCGATGGTGTTTCATCCTATACATGACCAATCTTTTTATTTGACCATGGATCACAAAAGAAAGCTCAAGGAGGAATATGGAATCGAGCCGTGGTCATTTGTTCAGAAGCTAGGAGAGGCTGTGTTCATTCCAGCCGGTTGTCCGCATCAAGTTAGGAACCTGAAGTCTTGCATAAAGGTTGCCCTGGATTTTGTGTCTCCGGAAAATATTGGCGAGTGCTTAAGACTGACTGAAGAATTCCGCAGGCTTCCCCAAGAGCATAGGGCTAAGGAAGATAAGTTGGAGGTGAAGAAAATGGTTCTTTATGCTCTGATTCAAGTTGTGGAGGCGCTAAATAATTTATAAGCTGTAAATCATGACTGATGATATTGAAGGCAACAACAAATCAACAGATGCTGCTTCTTTGCATGATATCACCGATCATCGTTATATCATGTAGAAGAAAATGGAATTGCCACCCCATGCATTTTCTTCTTATTATTATTATTAGTTCTAGCGTTTGTATTTCTGCTGGACTGTTTTCTATATATATACTGAATTTAAGTAAGTTTTAAATATGAAGTGAATATGTATTTCTATATATTTTTGTCTACTTCAAATAATAATAATCATAATTAAGAGGAGTTTGATTCTCAC

Network for GWHGAAEX002710

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02373.21	JmjC	849	947	7.10E-15

Protein Sequence

>GWHPAAEX002710
MEEERLEFLKKPELMPEEEAWDDDISFSLRKHSIKADSKSEKIQDQKFDGVSDVGVVSPKREKKKKRKTSLNFEDKLNHVMSSSFDKEDSDCWIVASTGNLKGKAKEFEKRKYQNGDKFETGIASFVKNRKRKALPIYLDYEEQGGSKRKLLTGDDALMCHQCQRNDKGAVVRCMACNRKRYCYPCINRWYPQLAPDDFAIKCPFCRFNCNCKSCLRMRGISAPPIREIPKEEKKRYLLYVLRLLLPWFQELRIEQQLEKEVEARATGLALDQLKLQQAPCAKDERIYCNYCSTSIADFHRNCPKCAYDLCLSCCRELREGCLPGHNGQKEIKSNIPEGPLTALTHWRANADGSIPCPPEQVGGCGNSLLQLEYILQEDMLLELEENARTIIERESREFAKSHENSGSCTCLCVSVKTDIANDELRKAASREAIEDNFLYSPSSRHIQEGELEHFQKHWAKGEPVIVRDVLDLSSGLSWEPMVMWRALREKKVRKVKSENFEVKAIDCLDWFEVEINIHMFFHGYSVGRFCSDGWPEMLKLKDWPPSSSFEERLPRHGAEFVSALPFQEYTNPRNGPLNIAVMFPRDFLKPDLGPKTYIAYGFAEELGCGDSVTKLHCDMSDAVNVLTHTAEVPLTKAQLSKINELKEGKRNGAAVCKDQQALADEAKSYYDTERIDPGINAIGNNTISVLDGINSVSLFNGKCCDSTFPSDATLEKQNLRDVKNEHSEYSASNVALAVCSGEPLADKTLNVGDALSLGLSTSECYGTSSSIAEENTQSIEKQISRKRGRPRGSSRNLRITNSKKERGCRILNVSQTSTNEKIERPAKLMETADSSNAVVTKGMDTEEGGALWDIFRREDVPKLEEYLRKHFCEFNHFSNSPVPMVFHPIHDQSFYLTMDHKRKLKEEYGIEPWSFVQKLGEAVFIPAGCPHQVRNLKSCIKVALDFVSPENIGECLRLTEEFRRLPQEHRAKEDKLEVKKMVLYALIQVVEALNNL

Gene family

Gene family	subfamily
Transcription Factors Family	Jumonji

KEGG pathway

KO	Enzyme	pathway	mapID
K15601	KDM3	Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	92.860
SRP064423	SRR2545915	Juvenile tuber	86.150
SRP108465	SRR5643513	five period of Gastrodia elata	37.060
	SRR5643514	five period of Gastrodia elata	33.030
	SRR5643515	five period of Gastrodia elata	31.130
	SRR5643524	five period of Gastrodia elata	27.570
	SRR5643525	five period of Gastrodia elata	28.160
	SRR5643528	five period of Gastrodia elata	29.630
	SRR5643658	five period of Gastrodia elata	34.290
	SRR5643659	five period of Gastrodia elata	42.800
	SRR5643660	five period of Gastrodia elata	45.190
	SRR5643661	five period of Gastrodia elata	40.830
	SRR5643662	five period of Gastrodia elata	38.880
	SRR5643663	five period of Gastrodia elata	45.500
	SRR5643664	five period of Gastrodia elata	42.800
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	57.200
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	39.110
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	46.300
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	66.030
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	57.130
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	71.420
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	52.380
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	57.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	32.690
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	40.890
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	38.960
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	38.960
SRP279888	Gastro	Gastrodia elata tuber	47.23
	Juven	Juvenile tuber	76.32
	Mother_Gastro	Mother tuber of Gastrodia elata	38.35
	Mother_Juven	Mother tuber of Juvenile	63.21