Detail information of GWHGAAEX002715/evm.TU.scaffold_123.22
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|428202250|ref|YP_007080839.1| | 5.00E-34 | 4-hydroxybenzoate polyprenyltransferase [Pleurocapsa sp. PCC 7327] |
| nr | gi|301154093|emb|CBW30171.1| | 3.48E-91 | Chlorophyll synthase [Musa balbisiana] |
| Swissprot | tr|B7FA90|HPT1_ORYSJ | 5.00E-85 | Probable homogentisate phytyltransferase 1, chloroplastic (Precursor) |
| trEMBL | tr|E1UHG8|E1UHG8_MUSBA | 1.00E-91 | Chlorophyll synthase {ECO:0000313|EMBL:CBW30171.1} |
| TAIR | AT2G18950 | 1.00E-22 | homogentisate phytyltransferase 1 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000121 | 940395 | 1085880 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX002715
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01040.17 | UbiA | 103 | 368 | 3.90E-33 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09833 | HPT, HGGT, ubiA | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Ubiquinone and other terpenoid-quinone biosynthesis | map00130 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016765 | Molecular Function | transferase activity, transferring alkyl or aryl (other than methyl) groups |
| GO:0016021 | Cellular Component | integral component of membrane |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 9.630 |
| SRR2545915 | Juvenile tuber | 27.770 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.610 |
| SRR5643514 | five period of Gastrodia elata | 15.680 | |
| SRR5643515 | five period of Gastrodia elata | 12.650 | |
| SRR5643524 | five period of Gastrodia elata | 13.260 | |
| SRR5643525 | five period of Gastrodia elata | 61.940 | |
| SRR5643528 | five period of Gastrodia elata | 50.130 | |
| SRR5643658 | five period of Gastrodia elata | 133.610 | |
| SRR5643659 | five period of Gastrodia elata | 17.000 | |
| SRR5643660 | five period of Gastrodia elata | 7.230 | |
| SRR5643661 | five period of Gastrodia elata | 15.580 | |
| SRR5643662 | five period of Gastrodia elata | 8.490 | |
| SRR5643663 | five period of Gastrodia elata | 12.920 | |
| SRR5643664 | five period of Gastrodia elata | 6.810 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.690 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 12.620 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 9.330 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 9.150 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 5.140 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 3.000 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 4.520 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 4.970 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.330 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.630 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 12.860 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 12.860 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 17.04 |
| Juven | Juvenile tuber | 21.69 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.97 | |
| Mother_Juven | Mother tuber of Juvenile | 15.69 |