Gene detail

Detail information of GWHGAAEX002716/evm.TU.scaffold_123.24

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|384153276\|ref\|YP_005536092.1\|	1.00E-117	multidrug ABC transporter ATPase/permease [Amycolatopsis mediterranei S699]
KOG	KOG0055	0	Multidrug/pheromone exporter, ABC superfamily
nr	gi\|743866223\|ref\|XP_010905014.1\|	0	PREDICTED: ABC transporter B family member 11-like isoform X1 [Elaeis guineensis]
Swissprot	tr\|Q9M1Q9\|AB21B_ARATH	0	ABC transporter B family member 21
trEMBL	tr\|F6HZG2\|F6HZG2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60077.1}
TAIR	AT2G47000	0	ATP binding cassette subfamily B4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000121	1112991	1128291	-

Transcript Sequence
>GWHTAAEX002716 ATGGTAGCTTCGCACGTGTTGGAATCTTTCCTCAAAACTTAGACTAATTGTAATCGCTGGCGCGTAGAGTTGCTTGCTCACCAAGCAAAAGGAAGCACCGTAATCTGTCGAGTTCCCATCCCAAAGTTGCACGCAGTTTATACCCTATATAAATTCAGCTAGGGCAAGCAAGGTTCAGGACGTTCGACTGATCCCTCTGCTTTCTCCTACAGATAGCAGATCTGGGGGCATGCAAATAATTATAAATCTGATTGAGATAAGGTCTTCAGTTCAGTAGAGTAAGATTGGCCATTCAGCTGAAGAGATGGCAGAAGAAAATCGGGAGGTATGTTCCAGTGGTTTGCAGTTAAAAGAGACAGTTAAGAATGATGAGGGAGAGAAGAAGGAAGAAAACAAGCGCACCGTCCCTTTCCACAAGCTGTTTTCTTTTGCTGACTCCATTGATGTCTTGCTTATGCTTCTGGGTTCTGTTGGAGCGGTGGTGAATGGGGCTGGTTTGCCTCTCATGACAGTGCTCTTTGGGAACTTGATACAGTCTTTTGGAGGAGCTGAAGATATTCATGATGTCGTTCACAGGGTTTCAAAGGTATCCCTCGAGTTCATATACTTAGCAGTTGGCACAGGAATAGCATCCTTTTTCCAGGTTGCTTGTTGGATGGCCACCGGGGAAAGGCAGGCAGCAAGAATAAGAAACATGTACCTGAAAACCATCTTAAGGCAAGAAATTGCCTTCTTTGACCTGGAAACAAACACTGGGGAAGTTGTGGGGAGAATGTCAGGGGACACTGTTCTAATCCAGGATGCATTGGGTGAGAAGGTTGGGAAATTTATTCAGCTAACATCGACCTTTTTCGGGGGTATCATAGTTGCATTCATTCAGGGATGGCTTCTCTCCCTCGTGATGGTGTCCATAATCCCACTCCTTGTGCTTGCAGGTGCAATTATGTCCTTGGTTGTATCAAAGATGGCTTCCAAAGGTCAGAAGGCCTACGGGGATGCCGCAGTGGTTGTGGAGCAAGCAATCGGCTCCATTAGAACTGTTGCATCTTTCACAGGAGAAAAGCTTTCAGTGAACAGGTACCATGAAGCACTGAGAAATGCATACACTTCCAGCGTTCAGGAGGGCCTGGTTACTGGATTGGGTCTTGGTTTTGTTATGTTCTTCATGTTTGGCGGGTATTCTTTAGGTGTATGGTATGGAGGAAAGCTGATATTAGACAAGAGCAAAGGATATACTGGTGCAGATGTTCTTAATGTAATACTAGCTATTCTCACTGGTTCATTTTCTCTCGGCCAGGCGTCACCCAGCTTGTCAGCTTTTGCAGCCGGCCGCGCGGCGGCCTACAAAATGTTTGAGACGATCAACAGGAAACCAGAGATTGATGCTTATGACACGAGCACAAAGAAATTGGATGACATTCGTGGTGATATTGAATTCAAAGATGTGTATTTCAACTATCCGGCGAGGCCCGAGGAACAAATTTTCAGAGGATTTTCTCTTTCAATTAACGCCGGCACAACTGCAGCATTAGTTGGGGAGAGTGGCAGTGGGAAGTCGACAGTGATCAGCTTGATTGAAAGGTTTTATGACCCACAGTCTGGCGAGGTCCTCATTGATGGCATTAATATCAAAGATCTTCAGCTGAGATGGCTTAGGGGAAAGATTGGGCTTGTGAGCCAGGAGCCTGTTCTTTTTGCCTCCAGCATTAAAGATAACATCTCTTATGGAAAGAATAATCCAACAACCGAAGAGATCAGGGTTGCTGCTGATCTAGCTAATGCCGCCAAGTTCATTGATAAGTTGCCTGAGGGACTGGATACCATGGTTGGGGAGCATGGAACACAACTGTCTGGAGGGCAGAAGCAAAGAATTGCAATTGCTAGAGCCATTCTCAAGGATCCAAAGATACTGTTACTGGATGAAGCCACCAGCGCTCTCGATGCAGAATCCGAACGAGCGGTGCAGGAAGCACTCGATAGAGTCATGATGAGCCGGACGACTGTCATAGTGGCTCATCGTTTGAGCACAGTGAGGAATGCTAACAGCATTGCTGTTATTCATCGTGGCTCCATTGTTGAAAAAGGTTCGCATTTGGAGCTCACACAGGATCCAAATGGTGCTTATAGCCAACTTATAAGGCTGCAGGAAATGCATAAAAACACTGATGCAATGCCCCAATCTGATAATGAAAAAGTCAGTCTGTCGATGGACAGAGCAAGCCATTTGAGCGGACGCATGCCCTCCAAACACTCCATTAGCAGAGAGTCATCCTTGGAGCATAGCAGCCGCCGCCACTCGTTCTCAGCAGGCCATGTTTTACCTGTCTCTGAAAGTTTAGTAGAGGCCCCCATTAACAGCAGCAGCAGCACTAATGAGCAACCAAAAGAAGTGCCTCTCAGTCAACTCGCCACTCTTAACAAGCCGGAAATCCCAATCTTGCTGCTCGGCGCTGCGTCCGCAATCGTGAATGGTGTCATCTTCCCTGCCTTTGGAGTACTTCTTTCCAGCGTCATAAACTCTTTCTATGAGCCGCCGCACAAACTCAAGAAAGATTCCAAGTTCTGGTCGCTTATGTTCTTGATTTTTGGAGGAGTTTCTCTAGCTGCACATCCAGCAAAATCATACTTTTTCGGGCTGGCCGGCTCTAGATTGATCCGAAGGATCAGATTGATGACATTTGAGAAGGTTGTGAACATGGAGATAGCATGGTTTGATGATCCAAAGAATTCGAGCGGAGCAGTCGGCTCTCGGCTATCCGCTGATGCAGCCACCGTCAGAGGCCTTGTGGGCGATGCTCTTGCATTGATTGTTCAGAACATTACCACCTTAATTGCCGGCCTCGTAATTGCTTTCATTGCAAGTTGGCAGCTCTCTCTTATCATCTTGTCGATGATACCTATCATGGGCCTCAACGGATGGATCCAGATGAAATTCATGAAAGGATTTAGTGCTGATGCTAAGGTGATGTACGAGGAAGCGAGCCAAGTGGCGATTGATGCGGTCGGAAGCATAAGGACCGTTGCCTCATTTTCGGCTGAAGAGAAGGTTATGGATCTGTACAAGAAGAAGTGCGAAGGCCCAAGGAGGGCCGGAATCAGACAAGGAATCATTAGCGGGGTCGGCTTTGGGGCCTCCTTCTTCCTGCTCTTCTGTGTTTATGCCGCCAGCTTTTATGCCGGAGCCCGGCTGGTCGAGAATGGCAAGACAACATTCGGCAAAGTTTTTAGGGTTTTCTTCGCCCTGGCAATGGCATCCATTGGAATCTCTCAGTCGAGCTCACTGGCCCCAGATTCCACCAAAGCCAAATCAGCAGCAGCATCCGTGTTTTCAATTCTGGACAGGGAATCTAAAATCAACCCGAGCGACGAATCGGGCATGACATTAGAGTCTCTAGAAGGCGATATCGAGTTTCAGCATATAGGTTTCAAGTACCCTACGAGACCCGAGGTGCCGATTTTCCAGGATCTTTGCCTCTCCATCAGATCCGGGAAGACCGTCGCGCTGGTGGGGGAGAGCGGGAGCGGGAAATCAACGGCGATAGCGTTGCTGCAGAGATTTTACGATCCAGATTCGGGCCGCATACTCCTGGATGGAGTAGATCTGCACAAGTTCAGACTGAGATGGCTGAGGCAGCAAATGGGGCTAGTGAGCCAAGAACCAGCGCTGTTCAACGACACAATCCGAGCGAACATTGCTTACGGGAAGGAAGGAGAAGCCCAGGAGGGAGAGATCGTGGCCGCGGCGGAGGCGGCGAACGCGCACAAGTTCATATCGAGCTTGCAGCTGGGGTATGAGACAATGGTGGGAGAGCGAGGCATTCAGCTGTCAGGCGGGCAGAAGCAGAGGGTGGCGATCTCTCGGGCAATCGTGAAGGATCCGAGGATCTTGCTGCTTGACGAGGCCACCAGCGCGCTGGATGCCGAATCGGAAAGAATCGTTCAGGACGCGCTGGATCGCGTGATGGTCAGCCGGACCACCGTCGTCGTCGCTCACCGCCTCACGACGATCAAGAATGCGGATCTCATCGCCGTCGTGAAGAACGGAGCGATTATCGAGAAGGGAACGCACGAGTCCCTCATCCACGTCCGTGACGGCGCCTACGCCTCTTTGCTGGCGCTTCATTCCAGTGGTTCGCCTGCTGCTGCGCCGCAGTAGCTCGTCCGCATATCTCCTTAATGAATTTATTCAATTTTGTTGTCATTTAAATAAATAAATAAATAAATAAATATATATATATAATTTTTTTTTTAAAATTAAGTGAATTGGATAACAAAATTTTGAGATTACAACATCATTTGGTTTATCTTTGGAGTGGTTATTTTCATATTTTTATGAGTGCCACATCAGCATTGGGCCATGTGATCTGTATTATATCTGCAAAAACAATTGTCACAAAAGAATCTAAATAATGAACAAAGATCATCAAAATCAATTTGTGCCTCTTAAGGAATAAAATGAATCTATGGTAGCAGTTCATTCTGAATGAATCTATGGTTTTCTTTGCTTTCATGGCTTCAATGCCTTGATACTGTATGATATATATTATTACAGCTAATGGAGTTGCCTTTGTAATGATATTTTTGTAGTAAAATGAAATTGGTTTTGTGGAATGTGATCGTTTAAGTGTTTGATGTTGGTGTTGTGATGCTCTGGACGGAGTTATGGCTTTGTGAAATGTATATTGTTTGTTATTCGATACGAGTAAAGAGTTGTGTTCC

Network for GWHGAAEX002716

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	52	327	1.90E-58
PF00005.26	ABC_tran	396	543	1.80E-35
PF00664.22	ABC_membrane	713	983	3.90E-60
PF00005.26	ABC_tran	1053	1202	4.30E-33

Protein Sequence

>GWHPAAEX002716
MAEENREVCSSGLQLKETVKNDEGEKKEENKRTVPFHKLFSFADSIDVLLMLLGSVGAVVNGAGLPLMTVLFGNLIQSFGGAEDIHDVVHRVSKVSLEFIYLAVGTGIASFFQVACWMATGERQAARIRNMYLKTILRQEIAFFDLETNTGEVVGRMSGDTVLIQDALGEKVGKFIQLTSTFFGGIIVAFIQGWLLSLVMVSIIPLLVLAGAIMSLVVSKMASKGQKAYGDAAVVVEQAIGSIRTVASFTGEKLSVNRYHEALRNAYTSSVQEGLVTGLGLGFVMFFMFGGYSLGVWYGGKLILDKSKGYTGADVLNVILAILTGSFSLGQASPSLSAFAAGRAAAYKMFETINRKPEIDAYDTSTKKLDDIRGDIEFKDVYFNYPARPEEQIFRGFSLSINAGTTAALVGESGSGKSTVISLIERFYDPQSGEVLIDGINIKDLQLRWLRGKIGLVSQEPVLFASSIKDNISYGKNNPTTEEIRVAADLANAAKFIDKLPEGLDTMVGEHGTQLSGGQKQRIAIARAILKDPKILLLDEATSALDAESERAVQEALDRVMMSRTTVIVAHRLSTVRNANSIAVIHRGSIVEKGSHLELTQDPNGAYSQLIRLQEMHKNTDAMPQSDNEKVSLSMDRASHLSGRMPSKHSISRESSLEHSSRRHSFSAGHVLPVSESLVEAPINSSSSTNEQPKEVPLSQLATLNKPEIPILLLGAASAIVNGVIFPAFGVLLSSVINSFYEPPHKLKKDSKFWSLMFLIFGGVSLAAHPAKSYFFGLAGSRLIRRIRLMTFEKVVNMEIAWFDDPKNSSGAVGSRLSADAATVRGLVGDALALIVQNITTLIAGLVIAFIASWQLSLIILSMIPIMGLNGWIQMKFMKGFSADAKVMYEEASQVAIDAVGSIRTVASFSAEEKVMDLYKKKCEGPRRAGIRQGIISGVGFGASFFLLFCVYAASFYAGARLVENGKTTFGKVFRVFFALAMASIGISQSSSLAPDSTKAKSAAASVFSILDRESKINPSDESGMTLESLEGDIEFQHIGFKYPTRPEVPIFQDLCLSIRSGKTVALVGESGSGKSTAIALLQRFYDPDSGRILLDGVDLHKFRLRWLRQQMGLVSQEPALFNDTIRANIAYGKEGEAQEGEIVAAAEAANAHKFISSLQLGYETMVGERGIQLSGGQKQRVAISRAIVKDPRILLLDEATSALDAESERIVQDALDRVMVSRTTVVVAHRLTTIKNADLIAVVKNGAIIEKGTHESLIHVRDGAYASLLALHSSGSPAAAPQ

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	60.050
SRP064423	SRR2545915	Juvenile tuber	37.590
SRP108465	SRR5643513	five period of Gastrodia elata	37.540
	SRR5643514	five period of Gastrodia elata	20.500
	SRR5643515	five period of Gastrodia elata	65.210
	SRR5643524	five period of Gastrodia elata	47.670
	SRR5643525	five period of Gastrodia elata	125.500
	SRR5643528	five period of Gastrodia elata	418.750
	SRR5643658	five period of Gastrodia elata	126.640
	SRR5643659	five period of Gastrodia elata	35.930
	SRR5643660	five period of Gastrodia elata	29.160
	SRR5643661	five period of Gastrodia elata	41.190
	SRR5643662	five period of Gastrodia elata	47.260
	SRR5643663	five period of Gastrodia elata	27.440
	SRR5643664	five period of Gastrodia elata	39.890
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	19.830
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.380
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	22.140
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	18.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	16.300
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	25.050
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	27.310
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	25.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.990
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.110
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.110
SRP279888	Gastro	Gastrodia elata tuber	18.91
	Juven	Juvenile tuber	16.04
	Mother_Gastro	Mother tuber of Gastrodia elata	254.57
	Mother_Juven	Mother tuber of Juvenile	273.33