Detail information of GWHGAAEX002720/evm.TU.scaffold_123.32


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21380Predicted RNA binding protein, contains G-patch domain
nrgi|672118431|ref|XP_008782424.1|0PREDICTED: LOW QUALITY PROTEIN: G patch domain-containing protein 1 [Phoenix dactylifera]
Swissprottr|Q67VW6|TGHH_ORYSJ0G patch domain-containing protein TGH homolog
trEMBLtr|M0TMB2|M0TMB2_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr8P03600_001}
TAIRAT5G230800SWAP (Suppressor-of-White-APricot)/surp domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000012113291161376834-
Transcript Sequence

Network for GWHGAAEX002720

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07713.12DUF1604381159.80E-36
PF01805.19Surp4074542.60E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0006397Biological ProcessmRNA processing
GO:0006396Biological ProcessRNA processing
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms41.210
SRR2545915Juvenile tuber26.600
SRP108465SRR5643513five period of Gastrodia elata13.690
SRR5643514five period of Gastrodia elata13.060
SRR5643515five period of Gastrodia elata11.650
SRR5643524five period of Gastrodia elata13.600
SRR5643525five period of Gastrodia elata11.970
SRR5643528five period of Gastrodia elata11.550
SRR5643658five period of Gastrodia elata15.750
SRR5643659five period of Gastrodia elata12.880
SRR5643660five period of Gastrodia elata18.210
SRR5643661five period of Gastrodia elata12.690
SRR5643662five period of Gastrodia elata15.750
SRR5643663five period of Gastrodia elata16.230
SRR5643664five period of Gastrodia elata18.670
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.280
SRR6049655Rhizomagastrodiae_C368-T10_good_123.030
SRR6049656Rhizomagastrodiae_C368-T07_good_117.560
SRR6049657Rhizomagastrodiae_C368-T07_good_125.890
SRR6049658Rhizomagastrodiae_C368-T04_good_124.950
SRR6049659Rhizomagastrodiae_C368-T04_good_128.780
SRR6049660Rhizomagastrodiae_C368-T01_good_122.470
SRR6049661Rhizomagastrodiae_C368-T04_good_123.170
SRR6049662Rhizomagastrodiae_C368-T01_good_115.110
SRR6049663Rhizomagastrodiae_C368-T01_good_117.500
SRR6049664Rhizomagastrodiae_C368-T10_good_113.690
SRR6049665Rhizomagastrodiae_C368-T10_good_113.690
SRP279888GastroGastrodia elata tuber 20.87
JuvenJuvenile tuber23.77
Mother_GastroMother tuber of Gastrodia elata 10.84
Mother_JuvenMother tuber of Juvenile 14.47